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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:463.1 nTPM
FANTOM5:546.8 Scaled Tags Per Million
Pig:167.9 nTPM
Allen mouse:4.2 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

463.1
Sample id Sample description nTPM
Area postrema
nTPM: 328.5
2306 Male, age 80, both hemispheres 370.3
2799 Male, age 61, both hemispheres 339.2
2054 Male, age 76, both hemispheres 275.9
Dorsal medullary reticular nucleus
nTPM: 302.4
2040 Female, age 85, both hemispheres 400.9
2088 Male, age 76, both hemispheres 260.8
2373 Male, age 61, both hemispheres 245.4
Dorsal motor vagal complex
nTPM: 276.2
2000 Male, age 74, unknown 383.3
2844 Male, age 55, unknown 336.5
2133 Female, age 91, both hemispheres 311.9
2185 Male, age 76, both hemispheres 295.7
2813 Female, age 72, unknown 268.3
2643 Male, age 74, both hemispheres 213.2
2797 Male, age 61, both hemispheres 208.9
2807 Female, age 85, both hemispheres 192.0
Gigantocellular reticular nuclei, medullary
nTPM: 321.8
1876 Female, age 85, both hemispheres 413.2
2314 Male, age 61, both hemispheres 338.4
2462 Male, age 74, both hemispheres 321.2
2387 Female, age 91, both hemispheres 306.7
2022 Male, age 76, right hemisphere 290.4
2310 Male, age 80, both hemispheres 261.0
Gigantocellular reticular nuclei, pars
nTPM: 276.8
2084 Female, age 85, both hemispheres 376.4
2168 Male, age 76, both hemispheres 282.1
2336 Male, age 61, both hemispheres 265.3
2706 Male, age 80, both hemispheres 233.3
2330 Male, age 80, both hemispheres 227.1
Inferior olive
nTPM: 392.5
2563 Male, age 74, both hemispheres 491.4
2085 Female, age 85, both hemispheres 452.8
2379 Male, age 80, both hemispheres 376.9
2178 Male, age 61, both hemispheres 362.2
2628 Female, age 91, both hemispheres 279.1
Lateral medullary reticular nucleus
nTPM: 384.7
2305 Male, age 74, both hemispheres 523.2
2190 Female, age 85, both hemispheres 393.9
2852 Male, age 80, both hemispheres 385.6
2044 Male, age 76, both hemispheres 350.7
2804 Female, age 91, both hemispheres 339.6
2374 Male, age 61, both hemispheres 315.3
Medial olivary nucleus
nTPM: 446.1
2138 Female, age 91, both hemispheres 488.9
1962 Male, age 76, both hemispheres 487.4
1943 Male, age 61, both hemispheres 474.9
2851 Male, age 80, both hemispheres 333.4
Medial vestibular nucleus
nTPM: 364.7
2743 Female, age 85, both hemispheres 407.3
2801 Male, age 74, both hemispheres 405.3
2134 Male, age 76, both hemispheres 366.8
2093 Male, age 80, both hemispheres 358.7
2803 Female, age 91, both hemispheres 344.0
2624 Male, age 61, both hemispheres 306.1
Motor hypoglossal nucleus
nTPM: 293.6
2125 Female, age 91, both hemispheres 357.7
2132 Female, age 85, both hemispheres 325.2
2182 Male, age 80, both hemispheres 296.1
2277 Male, age 76, both hemispheres 264.2
2461 Male, age 61, both hemispheres 224.6
Nucleus ambiguus
nTPM: 350.9
2071 Male, age 76, both hemispheres 460.4
2096 Female, age 85, both hemispheres 241.5
Nucleus cuneatus
nTPM: 284.6
2380 Male, age 80, both hemispheres 389.2
2564 Male, age 74, both hemispheres 351.8
2808 Female, age 85, both hemispheres 341.8
2376 Male, age 61, both hemispheres 293.3
2381 Male, age 80, both hemispheres 280.0
2100 Male, age 76, both hemispheres 260.8
2562 Male, age 61, both hemispheres 230.6
2131 Male, age 76, both hemispheres 225.4
2805 Female, age 91, both hemispheres 188.5
Nucleus gracilis
nTPM: 326.9
2627 Male, age 74, both hemispheres 409.3
2382 Male, age 80, both hemispheres 312.1
2299 Female, age 85, both hemispheres 259.3
Nucleus raphe obscurus
nTPM: 394.7
2845 Female, age 85, midline 431.0
2142 Male, age 76, midline 404.3
2800 Male, age 61, midline 348.7
Nucleus raphe pallidus
nTPM: 463.1
1924 Male, age 61, midline 593.2
2145 Male, age 76, midline 408.5
2183 Male, age 80, midline 387.6
Nucleus tractus solitarii
nTPM: 294.0
2144 Female, age 91, right hemisphere 444.2
2656 Male, age 76, both hemispheres 278.6
2191 Female, age 85, both hemispheres 263.9
2307 Male, age 80, both hemispheres 189.3
Parvicellular reticular nuclei
nTPM: 316.0
2119 Male, age 80, both hemispheres 400.3
2095 Male, age 76, both hemispheres 361.8
2558 Male, age 74, both hemispheres 186.1
Parvicellular reticular nuclei, medullary
nTPM: 325.8
2091 Female, age 85, both hemispheres 362.7
2189 Female, age 91, both hemispheres 342.0
2181 Male, age 80, left hemisphere 272.7
Peritrigeminal nucleus
nTPM: 391.4
2067 Female, age 85, both hemispheres 460.9
2136 Male, age 76, both hemispheres 384.3
2179 Male, age 61, both hemispheres 329.1
Prepositus hypoglossal nucleus
nTPM: 388.8
2855 Female, age 85, right hemisphere 431.8
2086 Male, age 80, both hemispheres 345.7
Spinal trigeminal nucleus, caudal
nTPM: 290.5
2390 Female, age 91, both hemispheres 330.7
2312 Male, age 61, both hemispheres 298.2
2308 Male, age 80, both hemispheres 286.6
2447 Male, age 76, both hemispheres 282.4
2642 Male, age 74, both hemispheres 254.6
Spinal trigeminal nucleus, interpolar
nTPM: 331.4
2066 Male, age 76, right hemisphere 385.6
2625 Male, age 61, both hemispheres 358.7
2033 Male, age 80, both hemispheres 326.2
2386 Female, age 85, both hemispheres 303.2
2389 Female, age 91, both hemispheres 283.3
Spinal vestibular nucleus
nTPM: 332.3
2806 Female, age 85, both hemispheres 387.7
2748 Male, age 76, both hemispheres 369.9
2186 Female, age 91, both hemispheres 335.5
2780 Male, age 80, both hemispheres 329.2
2384 Male, age 74, both hemispheres 300.4
2796 Male, age 61, both hemispheres 271.2
Superior vestibular nucleus
nTPM: 446.7
2383 Male, age 74, both hemispheres 546.9
2061 Male, age 76, both hemispheres 402.8
2015 Male, age 80, both hemispheres 390.3
Ventral medullary reticular nucleus
nTPM: 311.4
2372 Male, age 61, both hemispheres 313.3
2060 Male, age 76, both hemispheres 309.6
Ventrolateral medulla, A1-C1 cell groups
nTPM: 350.7
1986 Male, age 76, both hemispheres 384.1
2741 Female, age 85, both hemispheres 360.5
2180 Male, age 61, both hemispheres 344.2
2118 Male, age 80, both hemispheres 338.0
2302 Female, age 91, both hemispheres 326.6

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

546.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 546.8
FF:10174-103C3 60 years, female 666.7
FF:10038-101F2 18-64 years, mixed 500.0
FF:10155-103A2 76 years, female 473.6

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

167.9
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 167.9
Samples: 4

Max nTPM: 244.1
Min nTPM: 118.4
Sample A Female 118.4
Sample B Female 138.3
Sample C Male 170.7
Sample D Male 244.1

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 4.2
836 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 7.0
837 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 3.4
70795736 Antisense, RP_050712_01_H04, Mouse strain C57BL/6J (56 days, male) 1.4

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