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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:373.4 nTPM
FANTOM5:495.0 Scaled Tags Per Million
Pig:96.6 nTPM
Mouse:379.6 nTPM
Allen mouse:2.9 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

373.4
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 335.5
2396 Male, age 61, right hemisphere 462.6
2497 Male, age 66, unknown 290.4
2032 Female, age 42, unknown 253.5
Centromedial thalamic nucleus
nTPM: 285.8
2401 Male, age 76, right hemisphere 354.6
2279 Female, age 85, left hemisphere 217.0
Habenula
nTPM: 331.6
1957 Male, age 80, both hemispheres 372.4
2276 Male, age 66, unknown 331.0
2203 Male, age 61, left hemisphere 321.5
2252 Male, age 62, unknown 301.4
Lateral geniculate body
nTPM: 333.0
2575 Female, age 94, right hemisphere 382.4
2106 Female, age 67, right hemisphere 370.2
2399 Male, age 61, left hemisphere 352.1
2841 Male, age 80, both hemispheres 348.7
2857 Male, age 74, right hemisphere 333.3
2035 Female, age 72, unknown 322.6
1953 Male, age 62, unknown 294.2
2659 Male, age 66, unknown 260.5
Lateral thalamic nuclei
nTPM: 339.9
2765 Female, age 67, both hemispheres 462.7
2573 Female, age 94, left hemisphere 386.0
1903 Male, age 76, left hemisphere 316.4
2661 Female, age 72, unknown 291.0
2577 Male, age 74, both hemispheres 243.2
Medial dorsal thalamic nucleus
nTPM: 347.8
2572 Female, age 94, right hemisphere 533.4
2402 Female, age 67, both hemispheres 414.3
1971 Male, age 61, right hemisphere 404.6
2498 Male, age 66, unknown 395.7
1859 Male, age 76, both hemispheres 338.5
2039 Female, age 72, unknown 338.0
2026 Male, age 62, unknown 331.4
2492 Male, age 75, right hemisphere 326.9
1810 Male, age 48, unknown 321.0
2576 Male, age 74, both hemispheres 309.0
2283 Male, age 80, right hemisphere 301.2
1930 Female, age 42, unknown 282.7
2660 Female, age 72, unknown 225.0
Medial geniculate body
nTPM: 327.9
2650 Female, age 94, left hemisphere 398.3
2657 Male, age 74, right hemisphere 389.8
2049 Male, age 76, both hemispheres 378.4
2217 Female, age 72, unknown 320.3
2207 Male, age 80, right hemisphere 287.4
2571 Male, age 75, right hemisphere 261.9
1811 Female, age 42, unknown 259.3
Nucleus reuniens
nTPM: 330.5
2212 Female, age 67, left hemisphere 378.8
2205 Male, age 80, left hemisphere 343.7
2210 Female, age 85, left hemisphere 268.9
Nucleus rhomboideus
nTPM: 308.7
2213 Female, age 67, left hemisphere 359.4
2206 Male, age 80, both hemispheres 337.2
2280 Female, age 85, left hemisphere 229.6
Posterior thalamic nucleus
nTPM: 373.4
2649 Female, age 94, both hemispheres 549.4
2495 Female, age 67, right hemisphere 328.3
2655 Male, age 74, right hemisphere 308.2
2266 Male, age 76, right hemisphere 307.8
Pulvinar
nTPM: 335.9
2499 Male, age 66, unknown 417.4
1932 Male, age 80, right hemisphere 376.0
2398 Male, age 61, left hemisphere 358.8
2496 Female, age 67, right hemisphere 343.0
1972 Male, age 62, unknown 334.5
2724 Male, age 74, right hemisphere 325.5
2214 Male, age 76, right hemisphere 319.1
2582 Female, age 72, unknown 302.0
1929 Male, age 48, unknown 301.1
1899 Female, age 42, unknown 281.6
Subthalamic nucleus
nTPM: 361.3
2124 Male, age 62, unknown 447.8
2216 Male, age 48, unknown 388.9
2056 Female, age 72, unknown 380.2
2282 Male, age 61, both hemispheres 377.5
2275 Male, age 66, unknown 359.4
2779 Female, age 42, unknown 353.3
2406 Female, age 72, unknown 333.1
2658 Male, age 74, both hemispheres 250.2
Ventral posterolateral thalamic nucleus
nTPM: 293.1
2197 Male, age 80, both hemispheres 375.4
2397 Male, age 61, right hemisphere 361.7
2740 Male, age 76, right hemisphere 320.2
2570 Male, age 75, right hemisphere 287.2
2578 Male, age 74, both hemispheres 237.3
2581 Female, age 72, unknown 177.0
Ventral posteromedial thalamic nucleus
nTPM: 328.1
2202 Male, age 61, left hemisphere 394.8
2127 Male, age 76, right hemisphere 371.9
2281 Male, age 75, right hemisphere 338.1
2758 Male, age 80, both hemispheres 316.0
2653 Male, age 74, both hemispheres 220.0
Ventral thalamic nuclei
nTPM: 307.0
1860 Male, age 76, both hemispheres 364.5
2291 Female, age 72, unknown 344.7
1845 Male, age 48, unknown 328.4
2285 Male, age 62, unknown 326.9
2204 Male, age 80, both hemispheres 319.4
2580 Male, age 66, unknown 318.1
1912 Female, age 42, unknown 276.1
2858 Female, age 72, unknown 261.9
2652 Male, age 74, left hemisphere 222.8
Zona incerta
nTPM: 276.8
2403 Male, age 62, unknown 327.3
2208 Male, age 80, right hemisphere 326.6
2215 Male, age 66, unknown 299.9
2822 Male, age 74, right hemisphere 243.9
2663 Female, age 72, unknown 186.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

495.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 495.0
FF:10154-103A1 76 years, female 495.0

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.6
Pig sample Sample description nTPM
Thalamus
nTPM: 96.6
Samples: 4

Max nTPM: 144.8
Min nTPM: 67.8
Sample A Female 84.9
Sample B Female 67.8
Sample C Male 88.8
Sample D Male 144.8

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

379.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 379.6
Samples: 4

Max nTPM: 433.5
Min nTPM: 320.6
Sample A Male 433.5
Sample B Male 369.9
Sample C Female 394.2
Sample D Female 320.6

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.9
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 2.9
836 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 5.4
837 Antisense, RP_Baylor_102943, Mouse strain C57BL/6J (56 days, male) 1.2
70795736 Antisense, RP_050712_01_H04, Mouse strain C57BL/6J (56 days, male) 0.3

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