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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:390.9 nTPM
HPA:390.9 nTPM
GTEx:286.5 nTPM
FANTOM5:588.3 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA007730Antibody CAB004682
Glandular cells MediumMedium





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

390.9
overview
Male, age 65
Small intestine sample 232
nTPM: 467.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 433.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 337.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 325.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

286.5
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 286.5
Samples: 187

Max nTPM: 726.3
Min nTPM: 95.0
Std nTPM: 103.2
Median nTPM: 262.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 726.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 554.9
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 542.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 537.0
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 532.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 519.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 509.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 505.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 494.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 490.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 489.5
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 464.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 461.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 455.9
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 454.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 452.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 449.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 438.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 435.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 430.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 424.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 419.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 409.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 407.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 405.3
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 404.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 404.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 403.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 403.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 401.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 393.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 392.6
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 389.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 386.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 383.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 372.4
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 370.1
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 369.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 361.0
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 360.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 359.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 356.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 355.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 347.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 347.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 346.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 345.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 344.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 341.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 340.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 335.5
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 331.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 331.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 329.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 327.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 326.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 325.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 324.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 322.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 317.1
GTEX-14PKU-1626-SM-6871C 40-49 years, female 316.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 313.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 311.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 308.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 306.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 305.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 302.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 300.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 297.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 297.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 295.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 294.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 294.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 293.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 292.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 291.8
GTEX-14PN3-2026-SM-68729 60-69 years, female 291.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 287.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 284.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 281.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 280.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 276.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 276.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 274.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 272.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 270.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 269.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 269.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 268.7
GTEX-1192X-2526-SM-59868 50-59 years, male 268.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 264.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 264.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 262.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 262.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 261.8
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 256.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 253.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 252.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 252.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 251.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 251.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 248.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 247.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 246.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 246.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 246.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 246.4
GTEX-117YX-0326-SM-5GICL 50-59 years, male 246.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 245.8
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 245.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 244.8
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 244.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 243.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 242.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 240.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 240.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 239.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 239.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 238.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 235.9
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 235.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 233.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 232.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 232.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 231.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 231.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 231.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 231.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 230.1
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 229.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 229.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 227.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 226.2
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 226.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 225.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 225.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 223.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 222.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 222.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 222.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 219.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 213.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 213.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 211.9
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 211.7
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 209.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 206.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 206.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 203.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 203.5
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 203.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 200.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 199.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 199.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 196.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 195.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 195.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 194.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 192.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 191.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 185.5
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 184.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 183.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 181.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 181.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 180.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 172.4
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 171.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 170.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 170.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 169.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 166.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 161.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 159.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 155.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 153.5
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 150.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 150.1
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 149.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 141.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 140.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 140.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 138.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 137.5
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 111.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 111.0
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 95.0
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

588.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 588.3
FF:10024-101D6 15,40,85 years, mixed 588.3

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