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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:656.6 nTPM
HPA Brain:454.0 nTPM
GTEx:656.6 nTPM
FANTOM5:694.0 Scaled Tags Per Million
Pig:242.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

454.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 404.8
1981 Female, age 72, midline 637.1
2048 Male, age 55, midline 431.0
2194 Female, age 79, both hemispheres 362.8
2816 Male, age 47, midline 340.6
2565 Male, age 75, midline 252.6
Cervical spinal cord, dorsal horn
nTPM: 454.0
2173 Female, age 72, unknown 710.6
2296 Male, age 66, both hemispheres 630.4
2069 Male, age 47, both hemispheres 502.0
1877 Male, age 55, unknown 348.4
2721 Male, age 90, both hemispheres 286.8
2297 Male, age 75, both hemispheres 246.1
Cervical spinal cord, ventral horn
nTPM: 420.6
2098 Female, age 72, unknown 772.9
2809 Male, age 90, both hemispheres 433.3
2068 Male, age 55, unknown 366.1
2295 Male, age 66, both hemispheres 349.0
2480 Male, age 75, both hemispheres 326.1
2820 Female, age 79, both hemispheres 275.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

656.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 656.6
Samples: 159

Max nTPM: 1124.2
Min nTPM: 336.1
Std nTPM: 156.8
Median nTPM: 643.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1124.2
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1006.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 1006.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 992.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 991.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 965.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 952.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 946.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 911.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 910.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 904.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 884.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 872.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 870.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 862.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 862.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 854.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 852.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 849.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 845.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 840.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 840.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 840.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 837.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 836.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 829.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 828.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 827.8
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 826.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 815.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 815.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 811.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 801.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 794.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 788.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 786.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 784.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 783.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 778.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 768.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 767.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 758.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 751.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 751.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 743.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 737.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 731.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 725.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 723.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 721.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 714.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 714.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 712.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 701.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 697.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 697.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 691.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 691.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 690.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 689.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 684.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 680.8
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 679.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 676.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 676.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 676.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 673.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 670.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 669.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 667.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 666.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 661.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 657.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 657.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 653.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 652.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 650.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 647.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 645.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 643.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 640.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 640.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 640.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 638.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 635.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 633.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 632.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 628.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 628.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 625.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 624.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 623.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 621.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 617.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 613.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 612.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 611.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 610.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 610.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 610.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 602.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 601.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 595.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 595.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 594.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 594.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 591.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 588.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 588.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 587.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 586.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 585.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 579.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 579.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 572.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 559.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 558.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 552.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 551.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 549.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 548.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 540.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 531.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 525.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 524.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 523.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 522.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 517.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 516.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 513.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 510.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 508.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 498.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 494.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 487.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 484.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 468.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 467.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 464.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 455.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 451.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 448.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 447.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 446.6
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 443.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 435.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 432.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 427.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 424.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 407.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 404.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 403.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 396.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 390.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 390.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 384.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 363.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 344.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 336.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

694.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 694.0
FF:10181-103D1 60 years, female 887.1
FF:10159-103A6 76 years, female 500.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

242.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 207.4
Samples: 4

Max nTPM: 275.8
Min nTPM: 139.8
Sample A Female 139.8
Sample B Female 224.2
Sample C Male 275.8
Sample D Male 189.7
Ventral spinal cord
nTPM: 242.4
Samples: 4

Max nTPM: 272.1
Min nTPM: 193.9
Sample A Female 193.9
Sample B Female 263.1
Sample C Male 240.6
Sample D Male 272.1

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