MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:183.2 nTPM
HPA Brain:101.0 nTPM
GTEx:183.2 nTPM
FANTOM5:138.0 Scaled Tags Per Million
Pig:64.1 nTPM
Mouse:264.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 101.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.4
2019 Male, age 18, unknown 99.3
2411 Female, age 72, unknown 86.8
2219 Male, age 76, both hemispheres 80.3
1827 Male, age 72, unknown 76.6
2666 Male, age 74, left hemisphere 73.7
1870 Female, age 42, unknown 71.7
2828 Female, age 72, unknown 68.7
1830 Male, age 51, unknown 66.5
1833 Male, age 53, unknown 65.8
2586 Male, age 75, left hemisphere 34.3
Dorsal raphe nucleus
nTPM: 87.3
2298 Female, age 72, unknown 106.8
2047 Male, age 72, unknown 89.5
2750 Male, age 76, both hemispheres 89.0
1828 Male, age 53, unknown 84.7
2016 Female, age 72, unknown 66.7
Inferior colliculus
nTPM: 72.1
2097 Female, age 72, unknown 88.2
1890 Male, age 53, unknown 73.6
1848 Female, age 42, unknown 68.0
2849 Male, age 72, unknown 58.5
Median raphe nucleus
nTPM: 97.2
2220 Male, age 76, midline 97.2
Periaquaductal grey, anterior
nTPM: 87.4
2502 Female, age 75, unknown 97.2
1947 Male, age 18, unknown 83.7
1795 Male, age 51, unknown 81.3
Periaquaductal grey, dorsal
nTPM: 68.3
2850 Male, age 76, both hemispheres 76.6
1840 Male, age 53, unknown 68.8
2464 Female, age 72, unknown 67.2
1831 Male, age 72, unknown 60.7
Periaquaductal grey, lateral
nTPM: 78.6
2272 Male, age 74, both hemispheres 103.3
2140 Male, age 76, both hemispheres 69.4
2053 Male, age 18, unknown 63.1
Pretectal area
nTPM: 82.0
1817 Female, age 42, unknown 102.2
2007 Male, age 72, unknown 95.9
1816 Male, age 51, unknown 94.4
1944 Female, age 72, unknown 93.8
2273 Male, age 74, both hemispheres 92.0
2224 Female, age 72, unknown 87.1
1815 Male, age 53, unknown 85.9
2667 Female, age 75, unknown 75.1
2316 Male, age 76, right hemisphere 64.2
2825 Male, age 18, unknown 64.2
2407 Male, age 75, both hemispheres 46.8
Red nucleus
nTPM: 73.4
1821 Female, age 72, unknown 102.8
1954 Female, age 42, unknown 80.0
2785 Male, age 18, unknown 78.4
2725 Female, age 75, unknown 75.4
2503 Female, age 72, unknown 75.3
1865 Male, age 51, unknown 74.7
1904 Male, age 53, unknown 74.4
2823 Male, age 76, right hemisphere 73.0
2769 Male, age 72, unknown 69.6
2227 Male, age 72, unknown 65.8
2588 Male, age 74, left hemisphere 65.1
2584 Male, age 75, left hemisphere 46.3
Substantia nigra
nTPM: 101.0
1916 Female, age 42, unknown 145.6
2241 Male, age 72, unknown 131.2
2409 Female, age 72, unknown 121.7
1851 Male, age 51, unknown 110.5
1941 Male, age 53, unknown 99.8
1889 Female, age 72, unknown 99.2
2665 Male, age 74, both hemispheres 93.8
2699 Male, age 18, unknown 83.7
2590 Female, age 75, unknown 73.7
2583 Male, age 75, right hemisphere 50.4
Superior colliculus
nTPM: 69.3
2587 Male, age 74, left hemisphere 82.5
2668 Female, age 75, unknown 81.6
2261 Male, age 18, unknown 80.8
2087 Female, age 72, unknown 80.6
1796 Male, age 53, unknown 73.7
1895 Male, age 76, right hemisphere 71.2
1839 Male, age 51, unknown 66.4
1913 Female, age 42, unknown 64.3
1995 Male, age 72, unknown 57.5
2664 Male, age 75, both hemispheres 34.7
Ventral tegmental area
nTPM: 91.2
2218 Male, age 76, both hemispheres 109.0
2410 Female, age 72, unknown 106.6
1915 Female, age 42, unknown 101.2
2223 Female, age 72, unknown 79.6
2021 Male, age 53, unknown 76.0
1942 Male, age 51, unknown 74.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 183.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 183.2
Samples: 139

Max nTPM: 289.3
Min nTPM: 110.5
Std nTPM: 41.2
Median nTPM: 174.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 289.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 288.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 284.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 284.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 282.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 280.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 280.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 266.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 261.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 257.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 257.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 138.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.0
FF:10158-103A5 76 years, female 138.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 64.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 48.8
Samples: 4

Max nTPM: 56.1
Min nTPM: 38.9
Sample A Female 56.1
Sample B Female 48.1
Sample C Male 52.2
Sample D Male 38.9
Midbrain
nTPM: 57.5
Samples: 4

Max nTPM: 70.5
Min nTPM: 47.6
Sample A Female 52.9
Sample B Female 47.6
Sample C Male 70.5
Sample D Male 58.8
Periaqueductal gray
nTPM: 48.2
Samples: 3

Max nTPM: 52.8
Min nTPM: 45.5
Sample B Female 46.4
Sample C Male 52.8
Sample D Male 45.5
Superior colliculi
nTPM: 64.1
Samples: 4

Max nTPM: 68.4
Min nTPM: 57.4
Sample A Female 64.7
Sample B Female 66.0
Sample C Male 68.4
Sample D Male 57.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 264.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 264.0
Samples: 4

Max nTPM: 285.6
Min nTPM: 251.5
Sample A Male 264.0
Sample B Male 254.8
Sample C Female 285.6
Sample D Female 251.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
70784672 Antisense, RP_050706_01_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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