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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:7342.4 nTPM
FANTOM5:4870.0 Scaled Tags Per Million
Pig:4174.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA000572Antibody CAB016253Antibody CAB080180
Glial cells LowNot detectedMedium
Neuronal cells Not detectedNot detectedMedium







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7342.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 7342.4
Samples: 246

Max nTPM: 20431.3
Min nTPM: 907.2
Std nTPM: 3078.2
Median nTPM: 6842.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 20431.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 17568.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 17367.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 16960.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 15857.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 15290.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 14783.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 14657.4
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 14438.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 14187.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 14072.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 13577.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 13515.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 13194.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 12734.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 12516.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 12448.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 12424.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 12406.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 12196.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 12094.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 12070.3
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 11903.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 11714.4
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 11580.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 11535.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 11450.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 11358.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 11338.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 11278.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 10864.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 10755.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 10699.7
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 10571.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 10463.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 10406.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 10254.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 10103.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 10090.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 10059.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 10051.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 9851.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 9821.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 9787.7
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 9580.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 9463.8
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 9298.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 9191.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 9164.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 9117.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 9105.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 9037.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 9016.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 8964.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 8917.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 8850.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 8776.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 8776.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 8748.2
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 8730.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 8719.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 8582.2
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 8567.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 8533.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 8521.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 8511.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 8463.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 8461.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 8431.1
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 8413.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 8255.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 8249.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 8249.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 8235.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 8216.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 8183.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 8172.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 8160.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 8139.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 8087.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 8038.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 7987.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 7958.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 7952.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 7921.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 7872.5
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 7851.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 7790.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 7788.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 7764.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 7729.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 7684.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 7621.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 7584.5
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 7563.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 7533.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 7492.0
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 7491.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 7470.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 7395.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 7361.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 7349.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 7326.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 7325.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 7301.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 7272.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 7261.5
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 7259.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 7154.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 7136.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 7098.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 7063.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 7056.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 7033.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 7008.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 6980.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 6973.0
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 6956.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 6924.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 6889.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 6868.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 6866.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 6843.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 6841.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 6823.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 6772.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 6748.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 6703.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 6674.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 6659.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 6651.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 6543.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 6521.9
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 6520.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 6454.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 6437.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 6430.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 6407.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 6382.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 6369.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 6368.1
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 6317.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 6288.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 6271.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 6260.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 6258.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 6255.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 6245.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 6225.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 6215.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 6175.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 6169.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 6156.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 6150.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 6136.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 6105.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 6064.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 6064.5
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 5986.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 5953.1
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 5948.7
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 5946.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 5915.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 5877.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 5875.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 5871.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 5866.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 5831.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 5823.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 5816.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 5802.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 5766.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 5716.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 5687.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 5610.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 5600.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 5597.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 5591.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 5577.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 5539.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 5524.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 5507.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 5469.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 5438.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 5405.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 5304.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 5239.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 5228.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 5224.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 5218.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 5086.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 5064.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 5036.7
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 4987.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 4976.8
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 4968.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 4963.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 4951.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 4929.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 4895.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 4888.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 4810.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 4794.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 4781.7
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 4755.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 4704.9
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 4681.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 4618.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 4612.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 4570.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 4548.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 4524.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 4450.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 4355.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 4319.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 4305.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 4249.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 4209.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 4188.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 4161.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 4139.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 4057.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 3942.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 3920.9
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 3898.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 3835.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 3792.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 3778.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 3621.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 3556.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 3530.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 3513.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 3486.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 3437.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 3264.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 3055.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2971.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 2909.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 2809.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2776.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 2553.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2168.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 2003.4
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1581.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1473.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 907.2
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

4870.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4870.0
FF:10164-103B2 76 years, female 4870.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4174.9
Pig sample Sample description nTPM
Caudate
nTPM: 4174.9
Samples: 4

Max nTPM: 5359.6
Min nTPM: 2931.2
Sample A Female 2931.2
Sample B Female 4586.7
Sample C Male 5359.6
Sample D Male 3822.2

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