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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:3170.7 nTPM
GTEx:3170.7 nTPM
FANTOM5:3763.9 Scaled Tags Per Million
Pig:800.1 nTPM
Mouse:983.6 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3170.7
GTEx sample id Sample description nTPM
Retina
Average nTPM: 3170.7
Samples: 105

Max nTPM: 6061.2
Min nTPM: 1646.1
Std nTPM: 797.6
Median nTPM:
452_1 88 years, female 6061.2
264_1 73 years, female 4789.9
384_1 83 years, male 4662.2
351_1 91 years, male 4503.9
375_1 74 years, female 4466.0
189_1 76 years, male 4454.0
237_1 82 years, male 4451.8
506_1 65 years, male 4390.9
42_1 85 years, male 4281.1
99_1 64 years, male 4269.2
349_1 83 years, male 4267.6
295_1 61 years, female 4225.6
4_1 88 years, female 4196.3
354_1 81 years, female 4185.7
406_1 79 years, male 4181.8
480_1 63 years, male 4109.0
394_1 75 years, female 3990.1
308_1 70 years, female 3966.1
173_1 67 years, male 3959.8
319_1 81 years, male 3941.3
376_1 75 years, female 3899.2
501_1 88 years, male 3868.4
17_1 71 years, male 3812.4
254_1 77 years, female 3734.0
377_1 82 years, female 3733.8
389_1 86 years, female 3722.7
177_1 74 years, male 3719.2
526_1 61 years, male 3701.8
137_1 83 years, male 3694.2
353_1 82 years, female 3690.9
396_1 62 years, male 3664.6
379_1 60 years, male 3613.0
347_1 72 years, male 3563.8
322_1 76 years, male 3451.6
356_1 87 years, female 3448.2
288_1 66 years, female 3435.9
117_1 61 years, male 3434.6
348_1 84 years, male 3390.3
414_1 84 years, female 3366.5
229_1 69 years, female 3353.4
313_1 79 years, female 3324.0
447_1 81 years, male 3313.8
320_1 89 years, female 3283.7
145_1 84 years, male 3226.6
405_1 91 years, male 3202.9
142_1 61 years, female 3194.1
243_1 75 years, male 3182.5
109_1 81 years, female 3166.3
265_1 87 years, male 3155.6
35_1 74 years, female 3139.1
386_1 76 years, male 3129.0
9_1 66 years, female 3121.4
115_1 83 years, male 3117.3
41_1 94 years, female 3108.8
163_1 78 years, male 3087.0
120_1 70 years, female 3029.3
350_1 84 years, female 3021.8
316_1 62 years, male 3017.8
352_1 62 years, male 2993.7
425_1 59 years, female 2982.9
251_1 78 years, male 2955.8
355_1 70 years, female 2922.6
404_1 82 years, female 2905.2
286_1 68 years, female 2888.9
119_1 70 years, female 2887.8
291_1 76 years, male 2881.2
518_1 75 years, female 2857.9
126_1 63 years, male 2838.0
162_1 79 years, female 2816.6
321_1 62 years, female 2797.1
217_1 76 years, male 2793.5
315_1 62 years, female 2775.3
172_1 72 years, female 2774.6
314_1 67 years, male 2762.0
6_1 73 years, female 2681.0
335_1 73 years, female 2671.5
317_1 60 years, male 2662.8
81_1 67 years, male 2655.8
266_1 85 years, male 2652.3
18_1 88 years, male 2631.2
292_1 71 years, male 2612.3
324_1 76 years, male 2597.9
153_1 70 years, female 2581.3
503_1 68 years, male 2573.5
499_1 55 years, female 2509.0
517_1 88 years, male 2492.0
307_1 66 years, female 2358.7
318_1 68 years, male 2354.0
218_1 71 years, female 2353.9
413_1 59 years, female 2338.6
415_1 77 years, female 2287.9
293_1 68 years, female 2238.3
468_1 89 years, male 2226.0
2_1 77 years, female 2148.0
246_1 77 years, male 2142.7
139_1 64 years, female 2089.6
311_1 78 years, male 2087.9
491_1 89 years, female 2029.5
43_1 64 years, female 1887.2
495_1 57 years, female 1866.7
149_1 88 years, male 1857.7
89_1 63 years, male 1857.3
32_1 67 years, male 1810.1
490_1 67 years, female 1714.8
466_1 57 years, female 1646.1
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3763.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 3763.9
FF:10030-101E3 24-65 years, mixed 3763.9

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

800.1
Pig sample Sample description nTPM
Retina
nTPM: 800.2
Samples: 4

Max nTPM: 944.7
Min nTPM: 694.9
Sample A Female 780.8
Sample B Female 780.2
Sample C Male 944.7
Sample D Male 694.9

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

983.6
Mouse sample Sample description nTPM
Retina
nTPM: 983.6
Samples: 4

Max nTPM: 1072.0
Min nTPM: 866.5
Sample A Male 1065.0
Sample B Male 866.5
Sample C Female 1072.0
Sample D Female 931.0

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