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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:4776.4 nTPM
GTEx:4399.8 nTPM
FANTOM5:5918.9 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA000572Antibody CAB016253Antibody CAB080180
Glial cells Not detectedLowHigh
Neuronal cells MediumMediumHigh







HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4776.4
Sample id Sample description nTPM
Hippocampus
nTPM: 4776.4
2529 Female, age 94, left hemisphere 5925.8
1898 Male, age 80, left hemisphere 5098.0
2148 Female, age 91, left hemisphere 4942.6
2621 Female, age 67, right hemisphere 4462.9
1911 Female, age 85, right hemisphere 4260.6
1855 Male, age 76, left hemisphere 3968.9

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

4399.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 4399.8
Samples: 197

Max nTPM: 15848.9
Min nTPM: 919.6
Std nTPM: 2173.9
Median nTPM: 3989.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 15848.9
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 11357.9
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 11213.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 11077.0
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 10967.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 9559.1
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 8617.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 8528.1
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 8353.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 7738.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 7711.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 7702.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 7678.9
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 7656.7
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 7641.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 7617.1
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 7529.0
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 7488.7
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 7296.4
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 7046.1
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 6995.3
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 6946.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 6928.7
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 6886.2
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 6796.0
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 6504.1
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 6443.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 6435.9
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 6281.0
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 6201.5
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 6199.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 6187.5
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 6178.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 6132.5
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 6128.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 6069.7
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 6028.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 5997.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 5990.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 5978.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 5921.7
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 5826.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 5813.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 5772.8
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 5759.3
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 5750.9
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 5694.1
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 5674.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 5657.6
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 5609.2
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 5417.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 5409.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 5373.1
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 5367.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 5353.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 5339.3
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 5312.7
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 5310.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 5310.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 5306.5
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 5272.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 5178.6
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 5146.9
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 5119.7
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 5039.1
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 4944.2
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 4844.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 4787.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 4776.9
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 4769.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 4746.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 4743.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 4735.9
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 4708.3
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 4699.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 4619.9
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 4601.3
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 4596.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 4583.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 4557.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 4519.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 4502.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 4494.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 4478.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 4468.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 4428.4
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 4424.9
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 4416.3
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 4385.9
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 4283.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 4262.2
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 4240.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 4198.9
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 4160.0
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 4115.6
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 4086.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 4040.8
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 4028.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 3989.2
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 3988.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 3964.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 3911.1
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 3898.1
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 3859.2
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 3842.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 3818.9
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 3773.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 3770.5
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 3720.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 3695.1
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 3676.7
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 3668.0
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 3637.3
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 3630.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 3613.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 3595.0
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 3571.0
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 3565.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 3545.4
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 3514.2
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 3507.4
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 3494.7
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 3463.6
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 3457.7
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 3411.7
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 3397.7
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 3385.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 3336.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 3336.5
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 3302.0
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 3292.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 3216.1
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 3204.0
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 3074.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 3070.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 3067.8
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 3054.6
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 3026.8
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 3023.2
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 2950.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 2947.6
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 2945.8
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 2938.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 2926.9
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 2914.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 2876.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 2866.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 2865.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 2860.9
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 2848.1
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 2758.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 2754.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 2739.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 2713.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 2698.6
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 2694.7
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 2662.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 2633.8
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 2618.7
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 2617.0
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 2599.3
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 2556.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 2548.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 2532.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 2511.3
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 2496.5
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 2425.7
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 2368.6
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 2364.7
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 2362.0
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 2350.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 2309.4
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 2270.4
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 2236.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 2227.8
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 2211.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 2187.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 2142.5
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 2124.5
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 2116.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 2108.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 2051.0
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 2034.9
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 1972.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 1857.7
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 1809.8
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 1804.7
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 1594.7
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 1475.1
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 1393.9
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 1293.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1282.6
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 1097.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 1087.1
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 967.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 946.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 919.6
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

5918.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 5918.9
FF:10169-103B7 60 years, female 6111.0
FF:10153-102I9 76 years, female 5726.8

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