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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:141.7 nTPM
FANTOM5:164.1 Scaled Tags Per Million
Pig:166.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA059965
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 141.7
Samples: 246

Max nTPM: 284.5
Min nTPM: 58.5
Std nTPM: 35.6
Median nTPM: 138.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 284.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 273.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 268.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 254.0
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 247.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 243.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 243.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 235.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 231.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 226.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 221.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 216.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 208.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 201.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 199.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 196.8
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 196.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 192.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 191.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 191.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 189.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 182.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 181.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 180.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 180.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 179.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 179.5
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 178.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 175.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 174.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 174.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 173.2
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 169.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 168.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 167.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 167.4
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 166.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 166.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 165.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 165.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 165.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 165.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 165.1
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 165.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 163.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 163.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 162.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 162.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 161.5
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 161.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 161.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 159.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 159.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 159.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 158.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 157.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 157.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 157.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 156.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 156.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 156.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 156.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 156.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 155.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 153.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 153.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 153.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 153.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 153.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 152.7
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 152.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 152.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 152.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 151.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 151.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 151.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 151.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 151.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 150.7
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 150.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 149.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 149.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 149.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 149.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 149.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 148.7
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 148.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 147.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 147.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 147.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 147.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 147.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 147.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 147.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 147.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 146.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 146.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 145.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 145.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 145.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 145.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 144.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 144.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 144.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 144.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 143.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 143.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 143.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 143.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 142.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 142.3
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 141.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 141.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 141.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 141.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 141.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 141.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 140.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 139.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 139.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 139.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 139.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 138.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 138.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 138.2
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 138.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 138.0
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 138.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 137.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 137.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 137.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 137.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 136.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 136.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 136.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 136.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 135.7
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 135.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 135.1
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 134.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 134.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 134.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 133.8
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 133.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 133.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 133.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 133.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 132.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 132.4
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 132.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 132.0
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 131.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 130.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 130.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 130.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 130.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 130.5
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 130.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 129.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 129.7
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 129.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 128.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 128.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 127.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 127.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 127.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 126.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 126.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 126.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 124.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 124.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 123.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 123.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 123.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 123.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 123.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 123.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 123.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 122.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 122.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 121.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 120.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 120.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 120.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 120.4
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 120.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 120.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 120.0
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 119.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 119.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 119.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 119.3
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 118.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 118.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 117.8
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 117.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 117.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 116.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 116.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 115.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 114.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 114.4
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 114.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 114.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 113.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 113.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 113.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 113.4
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 113.2
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 112.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 112.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 112.1
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 111.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 111.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 111.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 109.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 109.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 108.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 108.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 107.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 106.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 106.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 106.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 106.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 106.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 105.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 104.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 102.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 94.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 92.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 91.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 90.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 86.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 84.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 83.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 82.9
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 80.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 77.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 77.0
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 76.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 73.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 72.6
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 68.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 67.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 60.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 58.5
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

164.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 164.1
FF:10164-103B2 76 years, female 164.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.9
Pig sample Sample description nTPM
Caudate
nTPM: 166.9
Samples: 4

Max nTPM: 201.4
Min nTPM: 135.4
Sample A Female 135.4
Sample B Female 181.2
Sample C Male 201.4
Sample D Male 149.6

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