MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:168.2 nTPM
HPA Brain:112.9 nTPM
GTEx:168.2 nTPM
FANTOM5:153.5 Scaled Tags Per Million
Pig:193.4 nTPM
Mouse:39.4 nTPM
Allen mouse:3.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 112.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 108.5
2666 Male, age 74, left hemisphere 132.4
2586 Male, age 75, left hemisphere 124.9
1827 Male, age 72, unknown 115.1
2019 Male, age 18, unknown 109.0
1833 Male, age 53, unknown 107.6
1870 Female, age 42, unknown 104.0
2219 Male, age 76, both hemispheres 102.4
2828 Female, age 72, unknown 98.7
2411 Female, age 72, unknown 95.8
1830 Male, age 51, unknown 94.7
Dorsal raphe nucleus
nTPM: 95.7
1828 Male, age 53, unknown 105.4
2298 Female, age 72, unknown 99.7
2750 Male, age 76, both hemispheres 99.4
2047 Male, age 72, unknown 87.2
2016 Female, age 72, unknown 86.9
Inferior colliculus
nTPM: 99.5
2849 Male, age 72, unknown 120.2
1848 Female, age 42, unknown 94.1
2097 Female, age 72, unknown 92.2
1890 Male, age 53, unknown 91.7
Median raphe nucleus
nTPM: 111.3
2220 Male, age 76, midline 111.3
Periaquaductal grey, anterior
nTPM: 104.0
1795 Male, age 51, unknown 113.7
2502 Female, age 75, unknown 105.4
1947 Male, age 18, unknown 92.9
Periaquaductal grey, dorsal
nTPM: 102.3
2850 Male, age 76, both hemispheres 114.3
1831 Male, age 72, unknown 108.8
1840 Male, age 53, unknown 100.2
2464 Female, age 72, unknown 85.8
Periaquaductal grey, lateral
nTPM: 89.9
2272 Male, age 74, both hemispheres 91.5
2053 Male, age 18, unknown 90.3
2140 Male, age 76, both hemispheres 87.9
Pretectal area
nTPM: 111.3
1817 Female, age 42, unknown 142.5
1816 Male, age 51, unknown 142.2
2007 Male, age 72, unknown 129.7
1944 Female, age 72, unknown 124.3
1815 Male, age 53, unknown 121.9
2667 Female, age 75, unknown 99.9
2224 Female, age 72, unknown 98.5
2407 Male, age 75, both hemispheres 97.7
2825 Male, age 18, unknown 95.6
2316 Male, age 76, right hemisphere 88.8
2273 Male, age 74, both hemispheres 82.7
Red nucleus
nTPM: 112.9
2725 Female, age 75, unknown 138.8
1821 Female, age 72, unknown 127.9
2503 Female, age 72, unknown 127.7
2785 Male, age 18, unknown 116.8
2588 Male, age 74, left hemisphere 113.3
2584 Male, age 75, left hemisphere 110.7
2227 Male, age 72, unknown 108.3
2769 Male, age 72, unknown 107.2
1865 Male, age 51, unknown 103.3
1904 Male, age 53, unknown 102.3
1954 Female, age 42, unknown 100.9
2823 Male, age 76, right hemisphere 97.2
Substantia nigra
nTPM: 103.1
1916 Female, age 42, unknown 122.7
2665 Male, age 74, both hemispheres 120.9
2699 Male, age 18, unknown 120.4
1889 Female, age 72, unknown 120.1
1851 Male, age 51, unknown 111.1
1941 Male, age 53, unknown 109.2
2583 Male, age 75, right hemisphere 99.9
2590 Female, age 75, unknown 86.2
2241 Male, age 72, unknown 73.6
2409 Female, age 72, unknown 67.0
Superior colliculus
nTPM: 110.0
2587 Male, age 74, left hemisphere 124.9
1913 Female, age 42, unknown 120.6
2668 Female, age 75, unknown 112.0
2261 Male, age 18, unknown 111.4
1796 Male, age 53, unknown 110.3
1995 Male, age 72, unknown 108.6
2664 Male, age 75, both hemispheres 105.9
1895 Male, age 76, right hemisphere 104.1
2087 Female, age 72, unknown 101.3
1839 Male, age 51, unknown 100.4
Ventral tegmental area
nTPM: 101.4
2223 Female, age 72, unknown 113.0
1915 Female, age 42, unknown 111.3
2218 Male, age 76, both hemispheres 111.3
2410 Female, age 72, unknown 95.1
2021 Male, age 53, unknown 90.9
1942 Male, age 51, unknown 87.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 168.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 168.2
Samples: 139

Max nTPM: 369.5
Min nTPM: 70.5
Std nTPM: 47.1
Median nTPM: 161.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 369.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 321.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 303.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 286.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 259.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 246.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 241.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 236.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 234.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 230.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 229.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 153.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 153.5
FF:10158-103A5 76 years, female 153.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 193.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 168.0
Samples: 4

Max nTPM: 225.0
Min nTPM: 140.0
Sample A Female 225.0
Sample B Female 158.0
Sample C Male 149.0
Sample D Male 140.0
Midbrain
nTPM: 191.1
Samples: 4

Max nTPM: 239.5
Min nTPM: 154.5
Sample A Female 239.5
Sample B Female 160.8
Sample C Male 209.7
Sample D Male 154.5
Periaqueductal gray
nTPM: 150.4
Samples: 3

Max nTPM: 152.4
Min nTPM: 147.6
Sample B Female 151.1
Sample C Male 152.4
Sample D Male 147.6
Superior colliculi
nTPM: 193.5
Samples: 4

Max nTPM: 241.1
Min nTPM: 155.9
Sample A Female 241.1
Sample B Female 155.9
Sample C Male 194.8
Sample D Male 182.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 39.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 39.4
Samples: 4

Max nTPM: 44.7
Min nTPM: 35.6
Sample A Male 44.7
Sample B Male 37.6
Sample C Female 35.6
Sample D Female 39.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.3
67814203 Antisense, RP_040920_01_F03, Mouse strain C57BL/6J (56 days, male) 3.3

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