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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:151.0 nTPM
HPA:76.3 nTPM
GTEx:151.0 nTPM
FANTOM5:282.1 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA059965
Glandular cells Medium



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.3
overview
Male, age 65
Small intestine sample 232
nTPM: 83.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 79.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 70.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 72.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 151.0
Samples: 187

Max nTPM: 311.5
Min nTPM: 87.5
Std nTPM: 28.7
Median nTPM: 149.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 311.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 229.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 224.7
GTEX-1192X-2526-SM-59868 50-59 years, male 221.7
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 219.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 219.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 218.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 216.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 211.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 204.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 194.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 191.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 188.6
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 186.8
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 186.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 186.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 183.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 183.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 182.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 181.0
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 180.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 180.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 178.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 178.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 177.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 175.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 175.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 174.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 173.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 172.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 170.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 170.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 169.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 169.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 169.6
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 168.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 168.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 168.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 167.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 167.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 167.5
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 167.5
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 167.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 166.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 166.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 166.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 166.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 165.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 165.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 165.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 163.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 163.3
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 163.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 162.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 162.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 162.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 161.8
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 161.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 160.5
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 159.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 159.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 159.5
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 158.6
GTEX-183FY-1626-SM-793D8 20-29 years, male 158.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 157.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 157.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 157.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 157.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 157.3
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 157.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 156.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 156.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 156.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 155.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 155.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 155.1
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 155.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 154.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 154.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 153.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 153.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 152.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 152.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 151.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 150.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 150.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 150.8
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 150.6
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 150.4
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 150.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 149.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 149.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 149.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 149.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 149.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 148.9
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 148.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 148.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 148.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 148.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 147.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 147.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 146.9
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 146.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 146.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 145.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 145.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 145.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 145.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 145.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 145.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 144.9
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 144.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 144.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 143.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 143.8
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 143.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 142.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 142.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 142.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 141.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 141.8
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 141.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 141.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 141.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 141.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 140.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 140.3
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 138.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 138.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 137.8
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 136.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 136.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 136.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 136.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 136.5
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 136.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 136.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 136.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 135.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 133.1
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 133.0
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 132.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 131.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 130.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 129.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 129.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 129.5
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 128.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 128.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 127.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 126.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 126.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 126.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 124.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 124.8
GTEX-144GM-1026-SM-79OKU 20-29 years, male 124.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 124.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 123.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 122.8
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 122.2
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 121.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 120.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 120.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 120.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 120.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 118.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 118.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 117.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 116.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 113.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 113.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 112.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 112.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 112.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 111.5
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 110.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 110.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 108.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 108.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 107.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 100.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 99.1
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 98.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 92.4
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 91.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 87.5
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

282.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 282.1
FF:10024-101D6 15,40,85 years, mixed 282.1

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