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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:10664.3 nTPM
FANTOM5:4753.9 Scaled Tags Per Million
Pig:8348.1 nTPM
Allen mouse:22.3 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10664.3
Sample id Sample description nTPM
Area postrema
nTPM: 4785.4
2306 Male, age 80, both hemispheres 8055.9
2799 Male, age 61, both hemispheres 3164.3
2054 Male, age 76, both hemispheres 3136.0
Dorsal medullary reticular nucleus
nTPM: 5827.6
2373 Male, age 61, both hemispheres 6213.5
2040 Female, age 85, both hemispheres 5950.5
2088 Male, age 76, both hemispheres 5318.9
Dorsal motor vagal complex
nTPM: 4014.2
2185 Male, age 76, both hemispheres 7141.1
2807 Female, age 85, both hemispheres 4822.8
2000 Male, age 74, unknown 4179.4
2797 Male, age 61, both hemispheres 3999.6
2133 Female, age 91, both hemispheres 3666.8
2643 Male, age 74, both hemispheres 3126.7
2813 Female, age 72, unknown 2682.6
2844 Male, age 55, unknown 2494.4
Gigantocellular reticular nuclei, medullary
nTPM: 6201.2
2314 Male, age 61, both hemispheres 11007.3
2387 Female, age 91, both hemispheres 7127.0
1876 Female, age 85, both hemispheres 6491.9
2310 Male, age 80, both hemispheres 5216.2
2022 Male, age 76, right hemisphere 4494.6
2462 Male, age 74, both hemispheres 2870.3
Gigantocellular reticular nuclei, pars
nTPM: 4917.1
2336 Male, age 61, both hemispheres 6305.0
2706 Male, age 80, both hemispheres 5411.8
2330 Male, age 80, both hemispheres 4948.0
2084 Female, age 85, both hemispheres 4370.0
2168 Male, age 76, both hemispheres 3550.7
Inferior olive
nTPM: 7441.0
2178 Male, age 61, both hemispheres 9792.9
2085 Female, age 85, both hemispheres 7191.6
2563 Male, age 74, both hemispheres 7160.9
2628 Female, age 91, both hemispheres 6866.8
2379 Male, age 80, both hemispheres 6192.6
Lateral medullary reticular nucleus
nTPM: 8077.5
2305 Male, age 74, both hemispheres 10413.7
2374 Male, age 61, both hemispheres 8813.5
2852 Male, age 80, both hemispheres 8398.9
2190 Female, age 85, both hemispheres 8137.6
2804 Female, age 91, both hemispheres 6884.4
2044 Male, age 76, both hemispheres 5816.7
Medial olivary nucleus
nTPM: 9257.2
1943 Male, age 61, both hemispheres 12428.8
1962 Male, age 76, both hemispheres 11005.5
2138 Female, age 91, both hemispheres 6808.5
2851 Male, age 80, both hemispheres 6786.0
Medial vestibular nucleus
nTPM: 5378.8
2801 Male, age 74, both hemispheres 7657.1
2803 Female, age 91, both hemispheres 6840.4
2093 Male, age 80, both hemispheres 5971.3
2624 Male, age 61, both hemispheres 5713.8
2743 Female, age 85, both hemispheres 4078.3
2134 Male, age 76, both hemispheres 2011.8
Motor hypoglossal nucleus
nTPM: 5145.3
2132 Female, age 85, both hemispheres 7413.2
2182 Male, age 80, both hemispheres 6936.3
2125 Female, age 91, both hemispheres 6826.2
2461 Male, age 61, both hemispheres 2673.4
2277 Male, age 76, both hemispheres 1877.3
Nucleus ambiguus
nTPM: 7291.0
2071 Male, age 76, both hemispheres 10290.8
2096 Female, age 85, both hemispheres 4291.1
Nucleus cuneatus
nTPM: 6750.6
2808 Female, age 85, both hemispheres 10240.7
2380 Male, age 80, both hemispheres 8892.9
2381 Male, age 80, both hemispheres 7990.6
2100 Male, age 76, both hemispheres 7654.9
2376 Male, age 61, both hemispheres 6990.9
2564 Male, age 74, both hemispheres 5592.5
2131 Male, age 76, both hemispheres 5169.2
2805 Female, age 91, both hemispheres 4431.9
2562 Male, age 61, both hemispheres 3791.6
Nucleus gracilis
nTPM: 8617.3
2382 Male, age 80, both hemispheres 11022.4
2627 Male, age 74, both hemispheres 7560.4
2299 Female, age 85, both hemispheres 7269.3
Nucleus raphe obscurus
nTPM: 10664.3
2845 Female, age 85, midline 12417.2
2800 Male, age 61, midline 9917.2
2142 Male, age 76, midline 9658.4
Nucleus raphe pallidus
nTPM: 8697.9
2145 Male, age 76, midline 10780.4
1924 Male, age 61, midline 9319.2
2183 Male, age 80, midline 5994.2
Nucleus tractus solitarii
nTPM: 2538.9
2307 Male, age 80, both hemispheres 2697.0
2191 Female, age 85, both hemispheres 2656.1
2656 Male, age 76, both hemispheres 2495.5
2144 Female, age 91, right hemisphere 2307.1
Parvicellular reticular nuclei
nTPM: 4693.9
2095 Male, age 76, both hemispheres 5808.0
2119 Male, age 80, both hemispheres 5734.8
2558 Male, age 74, both hemispheres 2539.0
Parvicellular reticular nuclei, medullary
nTPM: 4652.8
2189 Female, age 91, both hemispheres 5080.5
2091 Female, age 85, both hemispheres 4530.1
2181 Male, age 80, left hemisphere 4347.8
Peritrigeminal nucleus
nTPM: 7139.8
2067 Female, age 85, both hemispheres 7415.1
2136 Male, age 76, both hemispheres 7224.3
2179 Male, age 61, both hemispheres 6780.0
Prepositus hypoglossal nucleus
nTPM: 6262.4
2855 Female, age 85, right hemisphere 9032.8
2086 Male, age 80, both hemispheres 3491.9
Spinal trigeminal nucleus, caudal
nTPM: 6130.9
2312 Male, age 61, both hemispheres 8245.0
2308 Male, age 80, both hemispheres 7051.4
2447 Male, age 76, both hemispheres 5722.1
2390 Female, age 91, both hemispheres 5020.1
2642 Male, age 74, both hemispheres 4615.9
Spinal trigeminal nucleus, interpolar
nTPM: 4363.0
2386 Female, age 85, both hemispheres 5349.9
2033 Male, age 80, both hemispheres 4965.7
2389 Female, age 91, both hemispheres 4641.8
2066 Male, age 76, right hemisphere 3917.0
2625 Male, age 61, both hemispheres 2940.4
Spinal vestibular nucleus
nTPM: 5666.6
2806 Female, age 85, both hemispheres 7273.1
2748 Male, age 76, both hemispheres 6987.6
2186 Female, age 91, both hemispheres 5530.1
2780 Male, age 80, both hemispheres 4964.6
2384 Male, age 74, both hemispheres 4864.9
2796 Male, age 61, both hemispheres 4379.5
Superior vestibular nucleus
nTPM: 4580.7
2015 Male, age 80, both hemispheres 5669.5
2061 Male, age 76, both hemispheres 4200.7
2383 Male, age 74, both hemispheres 3871.8
Ventral medullary reticular nucleus
nTPM: 7252.7
2372 Male, age 61, both hemispheres 8196.2
2060 Male, age 76, both hemispheres 6309.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 6862.7
2180 Male, age 61, both hemispheres 8385.0
2118 Male, age 80, both hemispheres 8173.7
1986 Male, age 76, both hemispheres 6165.1
2741 Female, age 85, both hemispheres 5873.0
2302 Female, age 91, both hemispheres 5716.8

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

4753.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 4753.9
FF:10038-101F2 18-64 years, mixed 6124.5
FF:10155-103A2 76 years, female 4310.8
FF:10174-103C3 60 years, female 3826.4

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

8348.1
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 8348.1
Samples: 4

Max nTPM: 11171.1
Min nTPM: 4883.6
Sample A Female 9792.3
Sample B Female 4883.6
Sample C Male 7545.4
Sample D Male 11171.1

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.3
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 22.3
75457515 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 25.5
75496147 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 24.4
75496529 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 24.2
75496510 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 23.9
75457514 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 23.5
75457513 Antisense, RP_060523_03_F05, Mouse strain C57BL/6J (56 days, male) 23.4
75496148 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 23.3
75457512 Antisense, RP_060523_03_E05, Mouse strain C57BL/6J (56 days, male) 23.0
75496499 Antisense, RP_060523_03_E05, Mouse strain C57BL/6J (56 days, male) 22.0
75496500 Antisense, RP_060523_03_F05, Mouse strain C57BL/6J (56 days, male) 22.0
75496145 Antisense, RP_060523_03_E05, Mouse strain C57BL/6J (56 days, male) 21.6
75496146 Antisense, RP_060523_03_F05, Mouse strain C57BL/6J (56 days, male) 21.5
79556704 Antisense, RP_071204_01_D07, Mouse strain C57BL/6J (56 days, male) 21.4
75492744 Antisense, RP_060523_03_H05, Mouse strain C57BL/6J (56 days, male) 20.6
69117382 Antisense, RP_050330_01_A05, Mouse strain C57BL/6J (56 days, male) 20.4
75492714 Antisense, RP_060523_03_E05, Mouse strain C57BL/6J (56 days, male) 20.4
75492715 Antisense, RP_060523_03_F05, Mouse strain C57BL/6J (56 days, male) 20.2
2490 Antisense, RP_Baylor_102969, Mouse strain C57BL/6J (56 days, male) 17.9
75492725 Antisense, RP_060523_03_G05, Mouse strain C57BL/6J (56 days, male) 17.7

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