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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:10451.4 nTPM
HPA Brain:6296.3 nTPM
GTEx:10451.4 nTPM
FANTOM5:6850.0 Scaled Tags Per Million
Pig:11082.9 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6296.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 4996.7
1981 Female, age 72, midline 7066.3
2816 Male, age 47, midline 5540.5
2048 Male, age 55, midline 5073.0
2194 Female, age 79, both hemispheres 4426.4
2565 Male, age 75, midline 2877.3
Cervical spinal cord, dorsal horn
nTPM: 6296.3
2296 Male, age 66, both hemispheres 12591.7
2173 Female, age 72, unknown 9481.7
2069 Male, age 47, both hemispheres 5569.1
1877 Male, age 55, unknown 4838.1
2721 Male, age 90, both hemispheres 2727.4
2297 Male, age 75, both hemispheres 2569.8
Cervical spinal cord, ventral horn
nTPM: 5897.2
2098 Female, age 72, unknown 7852.4
2068 Male, age 55, unknown 6523.4
2480 Male, age 75, both hemispheres 5733.7
2809 Male, age 90, both hemispheres 5287.3
2820 Female, age 79, both hemispheres 5154.5
2295 Male, age 66, both hemispheres 4832.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10451.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 10451.4
Samples: 159

Max nTPM: 20018.8
Min nTPM: 1984.8
Std nTPM: 3670.2
Median nTPM: 10596.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 20018.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 18650.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 17964.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 17697.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 16771.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 16717.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 16412.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 16344.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 16255.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 16123.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 16119.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 16001.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 15986.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 15634.4
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 15491.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 15480.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 15041.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 14971.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 14915.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 14726.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 14688.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 14653.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 14546.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 14502.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 14259.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 14210.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 14111.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 14107.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 14049.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 13769.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 13598.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 13591.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 13501.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 13461.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 13387.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 13341.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 13266.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 13225.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 13191.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 13176.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 12979.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 12946.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 12784.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 12698.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 12627.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 12611.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 12412.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 12388.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 12312.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 12084.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 12026.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 11943.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 11897.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 11875.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 11801.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 11796.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 11789.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 11721.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 11596.3
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 11557.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 11505.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 11461.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 11446.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 11362.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 11230.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 11215.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 11194.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 11174.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 11051.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 11011.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 10917.0
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 10901.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 10892.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 10828.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 10803.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 10797.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 10768.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 10685.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 10659.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 10596.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 10509.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 10449.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 10333.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 10308.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 10301.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 10252.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 10223.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 10209.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 10068.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 10032.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 9985.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 9967.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 9955.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 9929.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 9849.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 9844.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 9758.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 9645.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 9609.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 9572.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 9533.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 9384.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 9312.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 9278.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 9262.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 9139.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 9113.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 9112.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 9088.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 9064.1
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 8853.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 8658.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 8655.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 8642.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 8469.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 8388.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 8269.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 7955.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 7840.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 7745.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 7684.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 7682.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 7596.7
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 7519.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 7486.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 7439.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 7364.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 7331.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 7306.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 7223.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 7111.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 7105.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 6622.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 6605.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 6278.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 6228.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 6139.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 5920.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 5902.1
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 5826.0
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 5637.9
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 5567.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 5540.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 5059.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 4877.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 4859.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 4606.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 4600.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 4369.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 4129.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 4004.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 3906.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 3674.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 3627.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 3308.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 3213.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 2820.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 2710.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1984.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

6850.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 6850.0
FF:10181-103D1 60 years, female 6864.5
FF:10159-103A6 76 years, female 6835.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

11082.9
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 8829.3
Samples: 4

Max nTPM: 10014.8
Min nTPM: 7036.7
Sample A Female 8792.5
Sample B Female 10014.8
Sample C Male 7036.7
Sample D Male 9473.1
Ventral spinal cord
nTPM: 11083.0
Samples: 4

Max nTPM: 15746.4
Min nTPM: 7570.8
Sample A Female 10364.9
Sample B Female 10649.7
Sample C Male 7570.8
Sample D Male 15746.4

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