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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:558.7 nTPM
HPA Brain:656.0 nTPM
GTEx:558.7 nTPM
FANTOM5:1354.2 Scaled Tags Per Million
Pig:0.5 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

656.0
Sample id Sample description nTPM
Amygdala
nTPM: 656.0
2695 Female, age 67, right hemisphere 1075.8
2814 Male, age 76, right hemisphere 699.0
2514 Male, age 75, right hemisphere 530.2
2517 Female, age 94, left hemisphere 512.6
1987 Female, age 91, left hemisphere 462.5
Basal amygdala
nTPM: 513.0
2609 Male, age 75, right hemisphere 837.4
1955 Male, age 76, both hemispheres 519.7
2243 Female, age 91, right hemisphere 479.9
2110 Male, age 80, left hemisphere 477.2
2685 Female, age 94, left hemisphere 395.4
2827 Female, age 67, right hemisphere 368.6
Central amygdala
nTPM: 592.5
2515 Male, age 75, right hemisphere 680.1
1905 Male, age 76, both hemispheres 599.2
2826 Female, age 94, left hemisphere 594.2
2239 Male, age 80, left hemisphere 581.1
2701 Female, age 91, right hemisphere 507.6
Corticomedial amygdala
nTPM: 460.5
2428 Male, age 75, right hemisphere 669.9
2829 Male, age 80, left hemisphere 547.4
2429 Female, age 94, left hemisphere 441.1
2240 Male, age 76, both hemispheres 421.5
2535 Female, age 67, right hemisphere 346.4
2242 Female, age 91, right hemisphere 336.7
Lateral amygdala
nTPM: 487.7
2516 Male, age 75, right hemisphere 628.2
1883 Male, age 76, both hemispheres 549.9
2256 Male, age 80, left hemisphere 508.2
2830 Female, age 67, right hemisphere 436.5
2255 Female, age 91, right hemisphere 423.0
2534 Female, age 94, left hemisphere 380.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

558.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 558.7
Samples: 152

Max nTPM: 2531.9
Min nTPM: 139.8
Std nTPM: 346.8
Median nTPM: 475.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 2531.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1933.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1478.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1412.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1322.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 1272.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1254.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 1213.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1213.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1176.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1175.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1147.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1105.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1073.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 1059.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1017.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 978.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 964.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 948.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 931.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 892.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 856.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 852.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 848.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 801.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 794.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 784.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 783.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 780.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 777.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 766.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 763.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 754.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 725.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 724.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 718.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 686.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 683.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 664.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 662.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 644.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 638.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 636.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 632.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 630.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 614.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 600.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 595.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 587.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 572.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 567.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 566.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 559.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 553.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 551.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 548.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 545.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 544.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 543.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 530.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 529.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 527.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 526.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 523.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 521.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 513.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 504.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 503.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 497.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 497.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 494.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 490.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 488.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 487.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 485.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 476.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 473.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 467.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 463.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 458.7
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 456.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 450.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 443.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 433.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 428.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 420.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 417.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 408.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 406.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 405.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 402.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 401.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 396.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 392.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 388.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 385.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 385.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 383.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 381.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 368.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 367.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 366.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 361.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 354.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 352.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 351.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 351.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 350.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 344.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 344.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 342.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 341.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 341.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 336.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 336.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 325.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 324.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 318.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 315.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 311.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 303.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 301.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 297.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 296.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 293.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 291.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 290.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 286.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 284.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 280.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 275.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 273.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 271.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 271.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 270.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 267.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 263.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 258.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 257.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 255.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 244.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 224.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 214.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 202.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 193.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 188.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 179.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 165.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 164.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 150.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 145.2
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 139.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1354.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1354.2
FF:10151-102I7 76 years, female 1354.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.5
Pig sample Sample description nTPM
Amygdala
nTPM: 0.5
Samples: 4

Max nTPM: 2.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 2.0

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