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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:483.7 nTPM
HPA Brain:740.0 nTPM
GTEx:483.7 nTPM
FANTOM5:3661.2 Scaled Tags Per Million
Pig:0.0 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

740.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 642.1
2565 Male, age 75, midline 782.9
2048 Male, age 55, midline 729.6
1981 Female, age 72, midline 667.1
2194 Female, age 79, both hemispheres 553.6
2816 Male, age 47, midline 477.2
Cervical spinal cord, dorsal horn
nTPM: 537.4
2173 Female, age 72, unknown 661.9
2721 Male, age 90, both hemispheres 611.2
2069 Male, age 47, both hemispheres 559.3
1877 Male, age 55, unknown 557.5
2297 Male, age 75, both hemispheres 484.2
2296 Male, age 66, both hemispheres 350.0
Cervical spinal cord, ventral horn
nTPM: 740.0
2480 Male, age 75, both hemispheres 955.4
2809 Male, age 90, both hemispheres 939.9
2098 Female, age 72, unknown 861.2
2295 Male, age 66, both hemispheres 683.0
2068 Male, age 55, unknown 513.3
2820 Female, age 79, both hemispheres 487.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

483.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 483.7
Samples: 159

Max nTPM: 2200.3
Min nTPM: 124.7
Std nTPM: 358.3
Median nTPM: 359.4
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 2200.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1684.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1668.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 1596.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1519.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1407.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 1375.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1336.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 1282.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1228.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 1151.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1125.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 1027.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 964.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 950.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 911.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 900.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 882.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 852.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 831.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 827.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 819.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 814.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 812.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 794.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 781.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 778.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 776.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 774.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 704.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 693.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 676.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 673.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 668.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 666.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 652.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 647.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 641.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 634.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 624.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 601.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 601.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 581.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 573.6
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 565.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 550.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 527.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 524.3
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 517.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 517.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 515.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 514.3
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 475.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 473.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 470.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 466.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 461.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 454.5
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 453.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 451.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 451.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 448.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 444.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 440.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 431.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 427.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 414.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 411.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 407.0
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 401.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 381.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 380.1
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 379.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 376.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 374.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 365.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 363.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 362.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 361.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 359.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 356.9
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 355.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 354.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 348.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 346.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 343.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 338.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 337.7
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 332.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 328.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 322.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 320.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 318.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 318.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 316.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 314.3
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 313.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 306.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 305.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 301.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 301.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 301.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 296.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 291.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 290.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 284.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 282.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 278.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 270.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 270.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 269.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 269.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 263.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 261.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 258.6
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 258.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 256.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 253.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 251.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 250.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 248.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 247.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 230.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 227.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 223.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 223.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 220.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 214.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 212.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 210.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 209.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 207.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 207.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 206.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 205.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 201.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 198.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 197.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 188.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 185.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 183.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 181.1
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 178.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 171.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 170.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 170.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 168.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 165.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 162.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 158.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 156.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 150.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 148.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 145.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 135.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 133.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 130.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 128.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 124.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3661.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 3661.2
FF:10181-103D1 60 years, female 4444.2
FF:10159-103A6 76 years, female 2878.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

0.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Ventral spinal cord
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

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