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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:277.0 nTPM
HPA:156.8 nTPM
GTEx:277.0 nTPM
FANTOM5:440.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody CAB037094
Glandular cells Medium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

156.8
overview
Male, age 65
Small intestine sample 232
nTPM: 97.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 181.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 165.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 182.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

277.0
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 277.0
Samples: 187

Max nTPM: 1450.3
Min nTPM: 64.5
Std nTPM: 287.7
Median nTPM: 146.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1450.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1339.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1228.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1156.9
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1100.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1095.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1091.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1020.4
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 923.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 913.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 901.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 880.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 875.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 871.3
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 864.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 849.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 837.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 819.9
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 755.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 753.1
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 744.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 702.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 698.0
GTEX-1192X-2526-SM-59868 50-59 years, male 678.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 676.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 626.4
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 570.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 569.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 513.4
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 509.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 493.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 467.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 458.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 441.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 441.2
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 425.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 420.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 408.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 392.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 348.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 343.9
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 329.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 327.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 318.1
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 313.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 309.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 308.0
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 307.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 305.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 304.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 298.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 287.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 284.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 251.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 248.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 243.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 243.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 235.3
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 233.7
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 224.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 223.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 217.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 214.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 210.4
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 193.9
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 192.6
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 189.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 188.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 180.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 177.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 177.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 175.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 173.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 168.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 168.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 168.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 167.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 162.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 161.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 161.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 160.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 160.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 159.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 158.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 158.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 156.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 155.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 152.7
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 152.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 150.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 147.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 146.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 146.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 146.2
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 145.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 144.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 141.0
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 140.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 140.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 139.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 139.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 137.1
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 134.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 133.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 133.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 132.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 132.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 131.9
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 131.5
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 129.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 129.0
GTEX-111YS-1426-SM-5GID8 60-69 years, male 127.9
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 127.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 127.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 127.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 126.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 124.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 124.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 124.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 123.6
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 123.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 123.2
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 122.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 121.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 120.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 119.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 118.8
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 118.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 118.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 117.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 117.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 117.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 115.4
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 115.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 114.1
GTEX-ZTSS-0926-SM-59865 40-49 years, male 113.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 113.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 112.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 111.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 110.9
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 110.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 110.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 110.1
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 109.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 108.7
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 108.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 107.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 100.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 99.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 99.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 96.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 96.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 95.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 95.3
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 94.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 94.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 93.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 92.1
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 91.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 90.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 89.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 89.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 89.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 87.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 86.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 86.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 84.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 83.5
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 83.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 80.3
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 80.0
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 79.2
GTEX-13O61-1326-SM-5KM31 60-69 years, male 78.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 78.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 77.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 76.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 76.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 76.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 76.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 76.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 75.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 74.9
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 74.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 73.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 72.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 66.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 64.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

440.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 440.6
FF:10024-101D6 15,40,85 years, mixed 440.6

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