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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:223.4 nTPM
HPA Brain:123.3 nTPM
GTEx:223.4 nTPM
FANTOM5:510.7 Scaled Tags Per Million
Pig:128.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

123.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 109.9
1981 Female, age 72, midline 146.2
2048 Male, age 55, midline 122.3
2194 Female, age 79, both hemispheres 96.3
2816 Male, age 47, midline 94.8
2565 Male, age 75, midline 90.0
Cervical spinal cord, dorsal horn
nTPM: 121.1
2173 Female, age 72, unknown 175.4
2296 Male, age 66, both hemispheres 162.7
2069 Male, age 47, both hemispheres 128.8
1877 Male, age 55, unknown 91.6
2297 Male, age 75, both hemispheres 89.8
2721 Male, age 90, both hemispheres 78.3
Cervical spinal cord, ventral horn
nTPM: 123.3
2098 Female, age 72, unknown 161.1
2480 Male, age 75, both hemispheres 151.6
2295 Male, age 66, both hemispheres 129.1
2809 Male, age 90, both hemispheres 124.3
2068 Male, age 55, unknown 92.7
2820 Female, age 79, both hemispheres 80.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 223.4
Samples: 159

Max nTPM: 374.0
Min nTPM: 106.0
Std nTPM: 54.4
Median nTPM: 213.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 374.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 365.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 350.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 344.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 341.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 327.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 327.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 325.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 316.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 314.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 313.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 310.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 308.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 303.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 301.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 301.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 300.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 294.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 291.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 290.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 290.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 289.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 286.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 286.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 285.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 284.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 282.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 282.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 282.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 276.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 274.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 273.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 273.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 273.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 272.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 271.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 271.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 268.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 267.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 267.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 267.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 263.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 260.8
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 257.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 256.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 256.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 249.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 248.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 246.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 244.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 243.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 243.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 242.0
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 241.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 239.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 239.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 238.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 238.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 238.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 236.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 235.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 232.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 228.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 227.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 227.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 227.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 227.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 227.0
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 224.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 223.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 223.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 222.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 221.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 220.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 220.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 220.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 219.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 218.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 213.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 213.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 212.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 212.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 211.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 210.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 210.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 208.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 207.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 207.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 205.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 205.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 204.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 203.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 202.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 200.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 200.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 199.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 199.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 197.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 194.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 194.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 194.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 193.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 192.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 192.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 192.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 191.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 191.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 190.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 190.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 190.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 188.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 188.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 188.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 187.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 187.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 186.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 186.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 186.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 184.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 184.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 184.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 183.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 182.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 181.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 180.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 179.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 177.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 176.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 176.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 172.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 170.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 170.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 169.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 168.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 168.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 167.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 167.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 164.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 163.1
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 162.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 162.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 161.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 160.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 159.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 159.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 158.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 157.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 151.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 149.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 149.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 148.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 147.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 146.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 142.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 141.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 130.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 126.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 126.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 106.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

510.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 510.7
FF:10181-103D1 60 years, female 768.6
FF:10159-103A6 76 years, female 252.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 126.0
Samples: 4

Max nTPM: 143.4
Min nTPM: 112.5
Sample A Female 114.6
Sample B Female 143.4
Sample C Male 133.3
Sample D Male 112.5
Ventral spinal cord
nTPM: 128.3
Samples: 4

Max nTPM: 144.7
Min nTPM: 110.4
Sample A Female 110.4
Sample B Female 138.1
Sample C Male 120.0
Sample D Male 144.7

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