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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
599.1
nTPM
FANTOM5:
391.4
Scaled Tags Per Million
Pig:
273.9
nTPM
Allen mouse:
15.9
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
599.1
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 355.1
2188
Female, age 91, both hemispheres
402.4
2301
Female, age 85, both hemispheres
344.3
1984
Male, age 76, both hemispheres
342.7
2090
Male, age 80, both hemispheres
330.9
Dorsal cochlear nucleus nTPM: 330.8
2802
Male, age 74, right hemisphere
409.6
2187
Female, age 91, both hemispheres
360.1
2370
Male, age 61, both hemispheres
300.7
2058
Male, age 76, both hemispheres
298.5
2378
Male, age 80, both hemispheres
284.9
Dorsal tegmental nucleus nTPM: 328.2
2326
Male, age 74, both hemispheres
349.4
2083
Male, age 80, both hemispheres
349.1
1936
Male, age 76, left hemisphere
317.4
2358
Male, age 61, both hemispheres
296.9
Dorsolateral tegmental area nTPM: 311.1
2654
Male, age 80, both hemispheres
349.9
2751
Female, age 85, both hemispheres
321.6
2360
Male, age 74, both hemispheres
317.2
2141
Male, age 76, both hemispheres
291.1
2337
Male, age 61, both hemispheres
275.6
Kolliker-Fuse nucleus nTPM: 380.1
2163
Male, age 80, both hemispheres
455.1
2793
Female, age 91, left hemisphere
409.1
2315
Male, age 76, right hemisphere
276.0
Lateral lemniscal nuclei nTPM: 480.0
2169
Male, age 76, both hemispheres
601.5
2746
Female, age 85, left hemisphere
504.2
2453
Male, age 74, right hemisphere
462.0
2036
Male, age 80, both hemispheres
449.5
2320
Female, age 91, left hemisphere
382.9
Lateral parabrachial nucleus nTPM: 403.7
2139
Female, age 85, right hemisphere
552.1
2790
Male, age 61, both hemispheres
388.5
2013
Male, age 80, both hemispheres
381.7
2792
Male, age 76, both hemispheres
292.6
Lateral vestibular nucleus nTPM: 377.8
2184
Male, age 76, both hemispheres
443.4
2311
Male, age 80, both hemispheres
312.2
Locus coeruleus nTPM: 446.3
2014
Male, age 55, unknown
542.3
2123
Female, age 91, both hemispheres
494.5
2720
Male, age 74, both hemispheres
451.4
2788
Male, age 74, unknown
440.9
2317
Female, age 72, unknown
424.6
1980
Male, age 76, both hemispheres
409.3
2162
Male, age 80, both hemispheres
360.8
Medial parabrachial nucleus nTPM: 359.6
2854
Male, age 80, both hemispheres
400.0
2170
Female, age 91, both hemispheres
381.5
2156
Male, age 61, both hemispheres
370.9
2786
Male, age 76, both hemispheres
322.8
2463
Female, age 85, right hemisphere
322.7
Medial periolivary nuclei nTPM: 497.2
2171
Female, age 85, both hemispheres
698.3
2063
Male, age 76, both hemispheres
633.8
2081
Male, age 80, both hemispheres
391.5
2791
Male, age 74, right hemisphere
384.1
2458
Female, age 91, both hemispheres
378.5
Motor facial nucleus nTPM: 461.4
2062
Male, age 76, both hemispheres
665.7
2697
Female, age 85, both hemispheres
461.2
2327
Male, age 80, both hemispheres
443.2
2365
Male, age 74, right hemisphere
420.3
2126
Male, age 61, both hemispheres
411.4
2795
Female, age 91, both hemispheres
366.6
Motor trigeminal nucleus nTPM: 395.6
2079
Male, age 80, both hemispheres
507.7
2560
Male, age 74, both hemispheres
420.5
2321
Female, age 91, both hemispheres
391.7
2309
Male, age 76, both hemispheres
336.8
2335
Male, age 61, both hemispheres
321.2
Nuclei of the trapezoid body nTPM: 582.0
2159
Male, age 61, both hemispheres
766.7
2735
Female, age 85, both hemispheres
689.9
1983
Male, age 76, both hemispheres
616.1
2166
Male, age 80, both hemispheres
466.2
2368
Female, age 91, both hemispheres
371.2
Nucleus raphe magnus nTPM: 558.8
2160
Male, age 61, both hemispheres
926.0
2172
Female, age 85, both hemispheres
674.6
2455
Male, age 74, both hemispheres
469.3
2328
Male, age 80, both hemispheres
460.3
2051
Male, age 76, both hemispheres
439.3
2459
Female, age 91, both hemispheres
383.6
Paramedian reticular nucleus nTPM: 432.1
2050
Female, age 85, both hemispheres
539.3
2057
Male, age 80, both hemispheres
457.7
2313
Male, age 61, both hemispheres
415.7
2052
Male, age 76, both hemispheres
315.5
Pedunculopontine tegmental nucleus nTPM: 341.7
2338
Male, age 61, both hemispheres
348.2
2334
Male, age 80, both hemispheres
345.7
1921
Female, age 85, both hemispheres
331.2
Pontine nuclei nTPM: 599.1
2727
Male, age 61, right hemisphere
894.2
1863
Male, age 55, unknown
745.1
2787
Female, age 85, both hemispheres
710.1
2109
Female, age 72, unknown
617.5
1968
Male, age 76, left hemisphere
594.7
2115
Male, age 80, left hemisphere
427.1
2454
Male, age 74, left hemisphere
423.2
2319
Female, age 91, both hemispheres
380.5
Pontine raphe nucleus nTPM: 434.8
2122
Female, age 85, midline
555.3
2853
Male, age 76, midline
314.3
Posteroventral cochlear nucleus nTPM: 364.8
2135
Female, age 91, both hemispheres
411.0
2752
Female, age 85, both hemispheres
410.8
2341
Male, age 80, both hemispheres
341.6
2070
Male, age 76, both hemispheres
341.2
2371
Male, age 61, both hemispheres
319.5
Principal sensory trigeminal nucleus nTPM: 526.0
2158
Male, age 61, both hemispheres
780.1
2008
Male, age 80, left hemisphere
560.6
2324
Male, age 76, both hemispheres
385.4
2367
Female, age 91, left hemisphere
378.1
Reticular pontine nucleus, caudal nTPM: 443.7
2092
Male, age 76, both hemispheres
482.5
2332
Male, age 80, right hemisphere
478.2
2559
Male, age 74, both hemispheres
424.5
2457
Female, age 91, both hemispheres
389.6
Reticular pontine nucleus, oral nTPM: 395.7
2012
Female, age 85, both hemispheres
499.5
2361
Male, age 74, both hemispheres
488.4
2366
Female, age 91, both hemispheres
371.0
1939
Male, age 80, both hemispheres
324.0
2167
Male, age 76, both hemispheres
295.4
Reticulotegmental nucleus nTPM: 405.5
2325
Male, age 76, both hemispheres
458.9
2452
Male, age 74, both hemispheres
426.0
2333
Male, age 80, both hemispheres
375.1
2322
Female, age 91, both hemispheres
362.0
Spinal trigeminal nucleus, oral nTPM: 368.3
2164
Male, age 80, both hemispheres
411.3
2737
Female, age 85, both hemispheres
400.5
1978
Male, age 76, both hemispheres
293.2
Subcoeruleus area nTPM: 385.9
2089
Male, age 76, left hemisphere
492.1
1958
Male, age 80, both hemispheres
428.3
2451
Male, age 74, both hemispheres
366.7
2323
Female, age 91, left hemisphere
342.6
2369
Female, age 85, left hemisphere
299.6
Superior olive nTPM: 459.8
1875
Female, age 85, both hemispheres
615.8
2020
Male, age 76, both hemispheres
490.1
2329
Male, age 80, right hemisphere
429.4
2364
Male, age 74, right hemisphere
384.7
2561
Female, age 91, both hemispheres
378.8
Ventral periolivary nuclei nTPM: 494.5
2130
Female, age 85, both hemispheres
580.0
2165
Male, age 80, both hemispheres
539.3
2023
Male, age 76, both hemispheres
442.1
2794
Female, age 91, left hemisphere
416.6
Ventrolateral tegmental area, A5 NE cell group nTPM: 404.9
1959
Male, age 76, both hemispheres
474.8
2449
Male, age 74, both hemispheres
435.4
2161
Male, age 80, both hemispheres
424.9
2840
Female, age 85, both hemispheres
402.8
2456
Female, age 91, both hemispheres
358.2
2359
Male, age 61, both hemispheres
333.7
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
273.9
Pig sample
Sample description
nTPM
Pons nTPM: 274.0
Samples: 4
Max nTPM: 322.8
Min nTPM: 201.4
Sample A
Female
313.2
Sample B
Female
201.4
Sample C
Male
258.4
Sample D
Male
322.8
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
