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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:313.1 nTPM
HPA:252.8 nTPM
GTEx:313.1 nTPM
FANTOM5:1667.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA006009
Glandular cells Not detected


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

252.8
overview
Male, age 65
Small intestine sample 232
nTPM: 126.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 236
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 305.1
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 343.8

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

313.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 313.1
Samples: 187

Max nTPM: 2348.8
Min nTPM: 89.6
Std nTPM: 276.6
Median nTPM: 219.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 2348.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1439.6
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 1266.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1264.7
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1244.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1217.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1060.8
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 874.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 811.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 789.5
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 760.5
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 740.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 731.9
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 698.8
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 686.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 634.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 617.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 602.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 597.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 591.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 577.7
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 562.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 532.4
GTEX-ZTSS-0926-SM-59865 40-49 years, male 509.9
GTEX-1192X-2526-SM-59868 50-59 years, male 493.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 486.6
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 485.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 475.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 474.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 471.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 464.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 430.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 419.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 415.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 412.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 410.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 409.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 398.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 392.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 383.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 360.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 360.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 356.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 353.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 337.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 329.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 318.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 317.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 317.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 313.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 311.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 309.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 309.0
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 307.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 306.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 306.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 305.6
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 295.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 293.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 288.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 287.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 285.1
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 277.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 276.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 275.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 274.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 270.1
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 269.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 268.6
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 267.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 264.5
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 264.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 260.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 259.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 254.2
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 250.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 249.0
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 247.8
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 247.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 247.0
GTEX-YFCO-1326-SM-664NV 40-49 years, male 244.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 243.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 243.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 241.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 240.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 239.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 238.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 233.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 232.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 229.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 227.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 223.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 220.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 219.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 217.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 216.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 215.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 213.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 212.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 211.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 210.9
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 207.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 207.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 207.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 206.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 205.9
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 203.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 203.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 202.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 202.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 201.6
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 200.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 198.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 197.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 197.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 196.1
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 192.9
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 192.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 192.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 191.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 190.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 190.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 190.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 187.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 187.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 187.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 185.6
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 184.4
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 183.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 182.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 182.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 181.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 181.0
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 180.5
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 179.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 178.3
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 176.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 173.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 172.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 168.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 167.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 165.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 165.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 161.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 158.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 156.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 155.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 155.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 151.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 151.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 151.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 150.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 150.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 149.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 148.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 148.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 147.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 146.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 146.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 145.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 145.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 145.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 142.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 141.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 139.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 139.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 138.3
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 137.8
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 136.6
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 133.2
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 131.2
GTEX-183FY-1626-SM-793D8 20-29 years, male 128.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 128.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 126.0
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 124.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 123.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 123.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 122.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 121.8
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 120.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 120.1
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 118.8
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 117.7
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 97.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 95.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 92.4
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 89.6
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1667.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1667.2
FF:10024-101D6 15,40,85 years, mixed 1667.2

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