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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:257.2 nTPM
HPA Brain:150.4 nTPM
GTEx:257.2 nTPM
FANTOM5:244.5 Scaled Tags Per Million
Pig:76.7 nTPM
Mouse:100.6 nTPM
Allen mouse:10.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

150.4
Sample id Sample description nTPM
Amygdala
nTPM: 150.4
2695 Female, age 67, right hemisphere 171.6
2814 Male, age 76, right hemisphere 164.8
2514 Male, age 75, right hemisphere 149.5
1987 Female, age 91, left hemisphere 133.7
2517 Female, age 94, left hemisphere 132.4
Basal amygdala
nTPM: 126.9
2827 Female, age 67, right hemisphere 152.5
2609 Male, age 75, right hemisphere 141.1
2110 Male, age 80, left hemisphere 130.1
1955 Male, age 76, both hemispheres 116.3
2685 Female, age 94, left hemisphere 110.7
2243 Female, age 91, right hemisphere 110.6
Central amygdala
nTPM: 132.1
2515 Male, age 75, right hemisphere 150.0
2826 Female, age 94, left hemisphere 143.0
1905 Male, age 76, both hemispheres 134.2
2239 Male, age 80, left hemisphere 122.4
2701 Female, age 91, right hemisphere 111.0
Corticomedial amygdala
nTPM: 118.0
2428 Male, age 75, right hemisphere 127.7
2535 Female, age 67, right hemisphere 123.9
2829 Male, age 80, left hemisphere 123.7
2240 Male, age 76, both hemispheres 116.4
2429 Female, age 94, left hemisphere 113.6
2242 Female, age 91, right hemisphere 102.9
Lateral amygdala
nTPM: 141.8
2830 Female, age 67, right hemisphere 195.1
2516 Male, age 75, right hemisphere 146.4
1883 Male, age 76, both hemispheres 144.3
2256 Male, age 80, left hemisphere 133.8
2534 Female, age 94, left hemisphere 125.5
2255 Female, age 91, right hemisphere 105.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

257.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 257.2
Samples: 152

Max nTPM: 1138.0
Min nTPM: 129.5
Std nTPM: 106.9
Median nTPM: 236.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1138.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 560.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 513.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 494.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 494.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 492.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 490.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 481.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 442.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 389.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 368.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 361.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 357.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 343.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 338.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 337.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 335.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 331.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 328.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 326.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 323.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 323.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 320.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 316.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 314.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 314.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 311.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 310.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 308.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 307.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 307.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 303.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 301.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 296.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 295.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 292.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 290.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 288.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 283.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 283.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 282.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 281.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 280.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 279.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 278.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 277.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 274.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 273.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 271.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 267.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 266.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 263.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 263.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 262.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 261.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 261.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 260.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 259.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 255.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 254.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 253.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 253.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 252.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 248.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 248.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 248.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 244.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 243.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 242.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 242.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 242.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 241.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 240.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 238.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 238.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 237.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 235.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 232.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 231.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 231.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 230.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 230.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 229.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 228.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 228.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 227.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 227.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 227.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 226.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 223.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 222.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 220.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 217.6
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 214.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 213.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 212.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 210.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 209.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 209.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 207.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 207.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 207.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 205.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 204.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 204.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 204.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 203.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 202.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 202.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 201.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 201.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 200.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 200.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 200.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 199.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 198.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 198.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 197.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 197.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 196.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 193.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 191.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 190.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 189.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 187.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 186.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 183.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 181.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 181.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 179.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 176.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 176.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 175.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 173.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 172.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 172.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 171.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 171.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 171.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 170.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 166.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 161.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 161.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 160.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 157.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 151.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 151.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 144.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 143.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 142.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 132.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 129.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

244.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 244.5
FF:10151-102I7 76 years, female 244.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.7
Pig sample Sample description nTPM
Amygdala
nTPM: 76.7
Samples: 4

Max nTPM: 97.7
Min nTPM: 67.0
Sample A Female 97.7
Sample B Female 70.4
Sample C Male 71.7
Sample D Male 67.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 100.7
Samples: 4

Max nTPM: 108.6
Min nTPM: 94.0
Sample A Male 94.0
Sample B Male 108.6
Sample C Female 102.7
Sample D Female 97.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.0
69288650 Antisense, RP_050407_01_D10, Mouse strain C57BL/6J (56 days, male) 10.0

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