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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:162.1 nTPM
HPA Brain:606.4 nTPM
GTEx:162.1 nTPM
FANTOM5:781.2 Scaled Tags Per Million
Pig:243.2 nTPM
Mouse:308.5 nTPM
Allen mouse:15.6 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

606.4
Sample id Sample description nTPM
Amygdala
nTPM: 495.9
2814 Male, age 76, right hemisphere 630.1
2517 Female, age 94, left hemisphere 503.0
2695 Female, age 67, right hemisphere 480.7
1987 Female, age 91, left hemisphere 434.1
2514 Male, age 75, right hemisphere 431.7
Basal amygdala
nTPM: 606.4
2685 Female, age 94, left hemisphere 700.7
2827 Female, age 67, right hemisphere 680.8
2243 Female, age 91, right hemisphere 622.7
1955 Male, age 76, both hemispheres 561.8
2609 Male, age 75, right hemisphere 547.2
2110 Male, age 80, left hemisphere 525.3
Central amygdala
nTPM: 583.8
2826 Female, age 94, left hemisphere 804.8
1905 Male, age 76, both hemispheres 589.7
2239 Male, age 80, left hemisphere 563.1
2515 Male, age 75, right hemisphere 502.3
2701 Female, age 91, right hemisphere 459.1
Corticomedial amygdala
nTPM: 562.2
2535 Female, age 67, right hemisphere 660.3
2429 Female, age 94, left hemisphere 626.7
2829 Male, age 80, left hemisphere 560.3
2240 Male, age 76, both hemispheres 542.0
2242 Female, age 91, right hemisphere 537.6
2428 Male, age 75, right hemisphere 446.6
Lateral amygdala
nTPM: 597.8
2534 Female, age 94, left hemisphere 751.0
2830 Female, age 67, right hemisphere 668.9
1883 Male, age 76, both hemispheres 610.2
2516 Male, age 75, right hemisphere 539.8
2256 Male, age 80, left hemisphere 525.7
2255 Female, age 91, right hemisphere 491.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

162.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 162.1
Samples: 152

Max nTPM: 388.3
Min nTPM: 8.9
Std nTPM: 59.3
Median nTPM: 160.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 388.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 318.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 307.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 305.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 277.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 275.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 273.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 266.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 265.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 264.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 263.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 260.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 246.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 244.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 238.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 238.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 237.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 233.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 227.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 226.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 222.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 221.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 220.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 219.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 216.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 215.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 213.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 211.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 209.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 208.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 206.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 204.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 203.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 202.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 200.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 199.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 197.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 197.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 196.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 194.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 193.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 192.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 189.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 189.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 188.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 187.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 187.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 187.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 184.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 182.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 181.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 180.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 179.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 178.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 178.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 177.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 177.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 177.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 174.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 173.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 172.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 171.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 170.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 170.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 168.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 168.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 168.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 166.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 166.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 166.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 164.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 163.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 162.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 162.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 161.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 161.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 159.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 158.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 158.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 156.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 156.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 156.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 153.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 152.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 150.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 150.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 148.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 148.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 148.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 147.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 145.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 145.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 144.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 144.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 143.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 142.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 141.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 139.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 137.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 137.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 134.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 133.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 129.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 125.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 125.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 124.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 124.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 123.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 123.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 121.5
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 120.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 119.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 119.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 117.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 116.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 114.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 114.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 112.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 112.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 111.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 110.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 110.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 109.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 106.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 104.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 103.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 103.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 100.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 99.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 99.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 98.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 95.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 95.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 95.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 94.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 93.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 91.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 90.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 89.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 88.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 86.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 83.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 77.7
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 76.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 75.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 74.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 72.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 70.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 69.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 64.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 61.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 8.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

781.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 781.2
FF:10151-102I7 76 years, female 781.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

243.2
Pig sample Sample description nTPM
Amygdala
nTPM: 243.2
Samples: 4

Max nTPM: 293.0
Min nTPM: 190.4
Sample A Female 293.0
Sample B Female 190.4
Sample C Male 230.8
Sample D Male 258.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

308.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 308.5
Samples: 4

Max nTPM: 324.5
Min nTPM: 291.8
Sample A Male 321.9
Sample B Male 291.8
Sample C Female 324.5
Sample D Female 295.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.6
69735759 Antisense, RP_050503_03_E02, Mouse strain C57BL/6J (56 days, male) 20.9
74513872 Antisense, RP_060208_01_E12, Mouse strain C57BL/6J (56 days, male) 10.3

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