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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:2991.5 nTPM
FANTOM5:2454.2 Scaled Tags Per Million
Pig:963.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA056030Antibody HPA063513Antibody CAB000039
Glial cells MediumLowMedium
Neuronal cells Not detectedNot detectedNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2991.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2991.5
Samples: 246

Max nTPM: 12083.1
Min nTPM: 100.7
Std nTPM: 2060.0
Median nTPM: 2404.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 12083.1
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 10589.1
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 9971.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 9633.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 8809.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8556.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 8532.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 7898.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 7673.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 7501.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 7297.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 7263.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 7170.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 7022.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 6942.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 6918.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 6814.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 6717.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 6696.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 6633.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 6570.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 6508.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 6505.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 6144.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 5887.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 5769.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 5483.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 5443.3
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 5352.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 5328.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 5287.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 5188.9
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 5140.5
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 5130.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 5122.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 5119.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 5100.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 5062.3
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 5038.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 4989.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 4982.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 4979.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 4855.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 4816.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 4753.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 4700.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 4695.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 4663.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 4610.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 4538.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 4437.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 4428.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 4419.4
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 4284.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 4267.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 4194.1
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 4142.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 4067.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 4016.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 4007.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 4000.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 3835.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 3785.3
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 3783.8
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 3754.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 3695.8
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 3605.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 3558.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 3514.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 3498.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 3464.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 3435.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 3410.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 3393.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 3342.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 3328.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 3319.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 3261.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 3260.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 3238.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 3231.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 3155.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 3139.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 3064.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 3049.5
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 3008.4
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 2970.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 2965.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 2960.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 2940.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 2932.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 2922.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 2897.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2862.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 2847.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 2831.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 2814.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 2772.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 2770.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 2762.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 2758.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 2757.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 2692.4
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 2690.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 2687.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2679.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 2670.3
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2636.4
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 2631.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 2621.6
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2594.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2578.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2576.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 2562.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 2550.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2530.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 2511.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 2506.6
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 2439.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2436.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2434.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 2425.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 2406.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 2403.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 2396.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2366.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 2364.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2354.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 2331.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 2303.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 2260.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 2245.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 2216.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 2211.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 2206.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 2200.7
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 2192.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 2189.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 2184.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 2179.8
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 2170.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 2168.8
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 2123.9
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 2115.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2110.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 2101.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 2032.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 2011.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 2001.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1971.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1913.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1902.9
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1888.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1885.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1879.9
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1854.5
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1850.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1821.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1817.5
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1811.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1798.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1789.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1783.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1765.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1760.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 1755.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 1751.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1744.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1702.2
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1684.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1682.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1680.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1670.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1650.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1642.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1632.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 1623.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1616.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1615.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1613.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1611.3
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1605.5
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1588.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 1586.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1586.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1577.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1545.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 1540.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1524.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 1517.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1511.2
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1493.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1483.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 1458.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1457.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 1414.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1410.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1403.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1386.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1381.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1379.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1378.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 1365.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1358.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1357.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1353.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 1353.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1290.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1270.4
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1266.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1241.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1215.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1207.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1166.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1163.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1110.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1108.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1100.4
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1062.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1056.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1040.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1019.3
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1010.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1003.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 955.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 925.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 918.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 912.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 889.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 886.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 878.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 850.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 804.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 794.4
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 778.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 764.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 764.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 692.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 653.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 649.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 577.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 510.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 428.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 376.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 293.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 100.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2454.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 2454.2
FF:10164-103B2 76 years, female 2454.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

963.9
Pig sample Sample description nTPM
Caudate
nTPM: 963.9
Samples: 4

Max nTPM: 1123.4
Min nTPM: 835.4
Sample A Female 964.6
Sample B Female 932.1
Sample C Male 1123.4
Sample D Male 835.4

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