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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:14557.6 nTPM
HPA Brain:18634.0 nTPM
GTEx:14557.6 nTPM
FANTOM5:10237.6 Scaled Tags Per Million
Pig:10056.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

18634.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 18634.0
1981 Female, age 72, midline 25237.1
2048 Male, age 55, midline 24453.0
2816 Male, age 47, midline 15729.7
2194 Female, age 79, both hemispheres 15287.8
2565 Male, age 75, midline 12462.2
Cervical spinal cord, dorsal horn
nTPM: 14289.3
2173 Female, age 72, unknown 24084.8
1877 Male, age 55, unknown 15763.0
2296 Male, age 66, both hemispheres 15135.9
2069 Male, age 47, both hemispheres 13157.9
2721 Male, age 90, both hemispheres 12814.2
2297 Male, age 75, both hemispheres 4779.9
Cervical spinal cord, ventral horn
nTPM: 18431.5
2098 Female, age 72, unknown 35014.1
2809 Male, age 90, both hemispheres 22565.3
2295 Male, age 66, both hemispheres 17631.2
2068 Male, age 55, unknown 13740.3
2480 Male, age 75, both hemispheres 11361.4
2820 Female, age 79, both hemispheres 10276.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

14557.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 14557.6
Samples: 159

Max nTPM: 51194.2
Min nTPM: 2514.6
Std nTPM: 6661.1
Median nTPM: 13176.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 51194.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 34576.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 32818.2
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 28993.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 28181.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 27949.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 27805.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 25978.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 25214.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 25053.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 24342.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 23229.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 23145.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 23120.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 23105.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 22839.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 22625.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 22450.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 22282.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 22177.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 21709.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 21604.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 21571.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 21475.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 21368.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 21102.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 21090.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 20099.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 20002.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 20000.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 19860.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 19748.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 19533.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 18913.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 18889.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 18789.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 18761.8
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 18663.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 18564.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 18506.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 18083.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 18047.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 17992.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 17992.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 17873.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 17668.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 17557.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 17411.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 17256.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 16851.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 16324.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 16261.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 16065.2
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 15924.1
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 15862.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 15751.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 15452.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 15451.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 15309.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 15145.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 15136.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 15060.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 15020.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 14988.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 14956.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 14884.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 14724.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 14613.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 14601.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 14532.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 14377.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 14122.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 14107.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 13967.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 13727.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 13693.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 13418.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 13359.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 13203.1
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 13176.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 13037.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 12983.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 12976.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 12931.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 12773.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 12671.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 12637.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 12482.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 12293.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 12292.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 12273.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 12239.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 12236.3
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 11954.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 11877.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 11864.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 11859.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 11785.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 11740.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 11674.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 11350.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 11348.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 11133.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 11103.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 11050.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 10894.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 10882.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 10731.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 10725.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 10648.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 10608.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 10600.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 10585.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 10485.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 10473.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 10421.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 10348.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 10146.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 10064.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 10033.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 10014.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 9990.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 9927.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 9554.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 9357.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 9337.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 9250.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 9022.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 9008.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 8971.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 8864.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 8841.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 8788.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 8775.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 8759.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 8569.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 8513.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 8441.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 8275.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 8239.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 7948.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 7943.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 7918.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 7543.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 7524.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 7414.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 7397.2
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 6961.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 6790.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 6671.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 6664.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 6577.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 5710.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 5700.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 4308.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 4166.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 3740.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 3147.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 2514.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

10237.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 10237.6
FF:10159-103A6 76 years, female 11525.6
FF:10181-103D1 60 years, female 8949.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

10056.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 7201.6
Samples: 4

Max nTPM: 9155.1
Min nTPM: 5939.6
Sample A Female 6140.2
Sample B Female 9155.1
Sample C Male 7571.6
Sample D Male 5939.6
Ventral spinal cord
nTPM: 10056.1
Samples: 4

Max nTPM: 11257.3
Min nTPM: 8471.8
Sample A Female 9413.8
Sample B Female 11081.3
Sample C Male 8471.8
Sample D Male 11257.3

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