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TISSUE PRIMARY DATA HIPPOCAMPUS Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Hippocampus
Tissue proteome
HIPPOCAMPUS - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

67.196
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:7352.6 nTPM
GTEx:3834.0 nTPM
FANTOM5:3985.9 Scaled Tags Per Million

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA056030Antibody HPA063513Antibody CAB000039
Glial cells MediumLowMedium
Neuronal cells Not detectedNot detectedNot detected







HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody CAB000039
Hippocampal formation mean intensity 67.196
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Polymorph layer of the dentate gyrus 52.374
Molecular layer of the dentate gyrus 40.826
Granular dentate gyrus 40.245
CA1 - oriens layer 45.911
CA1 - pyramidal layer 40.740
CA1 - radiatum layer 45.827
CA2 - oriens layer 56.503
CA2 - pyramidal layer 51.837
CA2 - radiatum layer 49.007
CA3 - oriens layer 47.232
CA3 - pyramidal layer 36.212
CA3 - radiatum layer 62.590
Stratum lucidum 42.625
Lacunosum moleculare 42.647
Subiculum 35.168

HIPPOCAMPUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7352.6
Sample id Sample description nTPM
Hippocampus
nTPM: 7352.6
1898 Male, age 80, left hemisphere 8240.9
2529 Female, age 94, left hemisphere 8218.5
2148 Female, age 91, left hemisphere 7967.4
1855 Male, age 76, left hemisphere 7548.6
1911 Female, age 85, right hemisphere 6880.2
2621 Female, age 67, right hemisphere 5260.0

HIPPOCAMPUS - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

3834.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 3834.0
Samples: 197

Max nTPM: 16305.7
Min nTPM: 437.8
Std nTPM: 2264.6
Median nTPM: 3425.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 16305.7
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 15516.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 11241.3
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 10375.5
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 10062.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 9215.4
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 8742.7
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 8620.2
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 7893.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 7576.5
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 7413.9
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 7247.6
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 6970.9
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 6889.1
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 6886.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 6842.2
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 6721.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 6555.7
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 6549.3
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 6520.3
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 6419.0
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 6384.7
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 6369.1
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 6201.0
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 5976.0
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 5964.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 5884.6
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 5867.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 5747.5
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 5663.1
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 5615.5
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 5549.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 5510.6
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 5489.2
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 5432.3
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 5419.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 5338.8
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 5296.8
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 5264.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 5239.6
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 5107.8
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 5069.9
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 4993.0
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 4872.0
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 4847.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 4839.3
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 4837.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 4775.0
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 4749.6
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 4738.4
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 4695.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 4693.2
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 4565.7
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 4551.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 4475.9
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 4431.7
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 4425.9
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 4414.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 4398.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 4396.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 4320.1
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 4285.6
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 4263.6
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 4263.6
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 4244.2
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 4171.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 4171.1
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 4109.7
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 4100.5
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 4092.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 4060.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 4048.7
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 3992.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 3959.1
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 3919.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 3895.4
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 3888.1
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 3871.4
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 3843.6
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 3791.7
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 3766.4
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 3753.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 3744.8
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 3737.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 3735.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 3734.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 3659.9
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 3656.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 3626.6
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 3551.6
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 3544.4
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 3497.4
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 3489.7
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 3476.7
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 3469.6
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 3468.3
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 3457.9
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 3448.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 3425.1
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 3333.0
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 3326.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 3298.0
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 3266.3
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 3258.1
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 3238.5
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 3219.2
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 3218.9
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 3190.0
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 3183.0
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 3142.7
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 3126.6
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 3075.0
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 3069.1
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 3059.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 3034.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 3032.8
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 3025.1
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 3024.8
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 2972.7
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 2947.4
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 2931.9
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 2921.8
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 2920.3
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 2896.8
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 2847.4
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 2824.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 2780.4
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 2776.3
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 2690.3
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 2677.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 2671.0
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 2662.4
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 2600.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 2586.4
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 2578.9
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 2578.7
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 2577.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 2565.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 2562.0
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 2553.0
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 2520.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 2504.2
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 2497.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 2483.3
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 2474.2
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 2458.2
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 2444.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 2436.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 2431.3
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 2428.3
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 2364.0
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 2343.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 2312.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 2311.6
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 2266.6
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 2251.1
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 2243.0
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 2229.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 2223.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 2208.0
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 2188.3
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 2111.6
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 2034.9
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 2002.8
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 1990.0
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 1967.2
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 1941.8
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 1918.4
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 1909.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 1893.0
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 1860.9
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 1860.6
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 1850.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 1841.6
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 1778.7
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 1773.3
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 1714.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 1697.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 1581.8
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 1542.3
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 1521.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 1408.6
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 1391.2
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 1363.3
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 1326.4
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 1316.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 1256.3
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 1254.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 1193.4
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 1046.5
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 985.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 938.6
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 827.1
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 667.3
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 564.1
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 460.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 437.8
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HIPPOCAMPUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

3985.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 3985.9
FF:10153-102I9 76 years, female 5169.8
FF:10169-103B7 60 years, female 2802.0

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