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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1007.8 nTPM
HPA Brain:357.9 nTPM
GTEx:1007.8 nTPM
FANTOM5:274.7 Scaled Tags Per Million
Pig:447.4 nTPM
Mouse:1638.0 nTPM
Allen mouse:13.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

357.9
Sample id Sample description nTPM
Amygdala
nTPM: 357.9
2814 Male, age 76, right hemisphere 419.4
2695 Female, age 67, right hemisphere 402.9
2514 Male, age 75, right hemisphere 352.7
2517 Female, age 94, left hemisphere 328.0
1987 Female, age 91, left hemisphere 286.8
Basal amygdala
nTPM: 299.9
2609 Male, age 75, right hemisphere 326.4
2110 Male, age 80, left hemisphere 321.9
2243 Female, age 91, right hemisphere 299.9
1955 Male, age 76, both hemispheres 293.3
2827 Female, age 67, right hemisphere 289.9
2685 Female, age 94, left hemisphere 268.1
Central amygdala
nTPM: 335.8
1905 Male, age 76, both hemispheres 394.9
2826 Female, age 94, left hemisphere 392.5
2515 Male, age 75, right hemisphere 342.9
2239 Male, age 80, left hemisphere 301.3
2701 Female, age 91, right hemisphere 247.4
Corticomedial amygdala
nTPM: 304.7
2428 Male, age 75, right hemisphere 342.5
2829 Male, age 80, left hemisphere 333.9
2429 Female, age 94, left hemisphere 327.9
2242 Female, age 91, right hemisphere 298.7
2240 Male, age 76, both hemispheres 274.6
2535 Female, age 67, right hemisphere 250.8
Lateral amygdala
nTPM: 313.3
2516 Male, age 75, right hemisphere 373.6
1883 Male, age 76, both hemispheres 368.8
2830 Female, age 67, right hemisphere 343.4
2534 Female, age 94, left hemisphere 326.5
2255 Female, age 91, right hemisphere 240.6
2256 Male, age 80, left hemisphere 227.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1007.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1007.8
Samples: 152

Max nTPM: 3768.5
Min nTPM: 346.4
Std nTPM: 390.1
Median nTPM: 933.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 3768.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 2421.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 2246.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 2162.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2081.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 1880.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 1731.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1563.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1549.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 1544.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1462.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1435.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1376.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1344.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1335.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 1319.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1317.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 1316.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 1304.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1299.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1272.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 1262.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1250.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 1225.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1213.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1211.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1194.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1177.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1172.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1168.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 1165.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 1162.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1161.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1152.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1152.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1141.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 1141.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 1140.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1134.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 1129.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1122.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1116.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1112.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1096.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1090.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1083.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1080.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1073.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1067.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 1056.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 1054.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1053.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1052.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 1043.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 1033.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1023.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 1018.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1013.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1009.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 1001.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 998.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 997.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 997.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 996.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 994.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 987.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 986.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 984.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 974.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 963.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 958.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 958.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 954.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 948.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 940.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 938.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 927.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 924.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 920.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 912.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 911.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 901.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 901.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 899.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 899.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 893.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 887.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 885.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 884.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 880.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 875.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 871.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 869.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 868.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 866.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 859.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 858.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 855.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 845.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 840.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 835.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 833.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 833.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 832.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 831.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 824.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 818.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 815.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 806.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 802.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 801.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 800.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 787.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 786.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 784.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 781.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 772.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 771.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 760.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 760.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 744.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 743.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 742.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 741.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 741.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 732.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 726.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 717.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 715.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 714.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 709.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 699.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 696.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 691.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 687.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 669.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 662.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 644.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 643.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 640.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 626.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 624.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 620.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 616.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 606.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 606.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 605.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 597.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 585.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 570.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 566.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 346.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

274.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 274.7
FF:10151-102I7 76 years, female 274.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

447.4
Pig sample Sample description nTPM
Amygdala
nTPM: 447.4
Samples: 4

Max nTPM: 615.4
Min nTPM: 326.3
Sample A Female 615.4
Sample B Female 440.0
Sample C Male 407.9
Sample D Male 326.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1638.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 1638.0
Samples: 4

Max nTPM: 1794.2
Min nTPM: 1507.3
Sample A Male 1507.3
Sample B Male 1651.1
Sample C Female 1794.2
Sample D Female 1599.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.1
69568980 Antisense, RP_050426_03_C01, Mouse strain C57BL/6J (56 days, male) 13.4
73992933 Antisense, RP_051214_03_C11, Mouse strain C57BL/6J (56 days, male) 12.8

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