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RPL27
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1426.4 nTPM
HPA:749.1 nTPM
GTEx:1426.4 nTPM
FANTOM5:79.2 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002649
Glandular cells High



SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

749.1
overview
Male, age 65
Small intestine sample 232
nTPM: 824.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 737.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 750.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 683.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1426.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 1426.4
Samples: 187

Max nTPM: 3461.2
Min nTPM: 644.5
Std nTPM: 416.4
Median nTPM: 1372.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3461.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2796.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 2467.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2457.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 2412.6
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2386.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 2344.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 2330.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2280.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 2202.6
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2156.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2067.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 2039.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2038.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2016.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1988.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1972.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1967.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1942.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 1918.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 1880.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 1876.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1869.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 1862.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 1831.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 1830.7
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1824.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1821.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1814.4
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1808.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 1784.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 1771.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 1752.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 1736.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 1719.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 1719.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1717.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 1704.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1697.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1671.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 1665.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1662.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 1652.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1651.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1648.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 1637.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1633.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 1632.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 1629.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 1623.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1619.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 1617.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1617.5
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 1613.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 1611.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 1608.9
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 1603.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1595.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1593.8
GTEX-1192X-2526-SM-59868 50-59 years, male 1575.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1571.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1566.4
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 1550.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 1548.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 1542.3
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 1540.3
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1532.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 1526.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 1524.8
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 1516.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 1513.0
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1506.6
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 1505.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 1504.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 1500.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 1497.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 1480.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 1476.0
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 1474.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 1465.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 1451.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 1444.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 1438.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1432.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1430.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1429.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 1425.4
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 1418.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1414.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1411.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 1411.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 1401.6
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 1375.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 1372.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 1371.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 1361.8
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1361.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 1356.2
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 1354.9
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1352.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 1351.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 1341.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 1313.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 1299.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 1299.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 1297.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 1294.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 1289.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1286.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 1285.7
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 1283.9
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1280.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 1278.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 1274.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 1274.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 1270.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 1268.4
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 1268.0
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1260.7
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1251.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 1248.8
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1247.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 1242.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1239.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 1238.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1233.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 1226.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 1225.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 1219.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 1214.3
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1210.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 1202.6
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 1192.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 1189.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 1178.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 1172.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 1153.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 1146.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 1144.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1128.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 1120.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 1115.0
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 1105.7
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1098.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 1097.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 1093.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1082.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 1081.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 1077.2
GTEX-13113-1226-SM-5EGHT 60-69 years, female 1075.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 1073.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1058.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1054.4
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 1038.1
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 1019.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 1019.1
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 1019.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 1017.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 1007.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 1004.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 1000.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 999.7
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 988.1
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 985.3
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 983.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 978.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 971.3
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 967.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 929.9
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 918.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 918.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 906.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 895.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 883.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 879.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 873.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 867.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 856.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 853.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 836.2
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 832.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 814.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 810.8
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 783.7
GTEX-111YS-1426-SM-5GID8 60-69 years, male 762.1
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 714.3
GTEX-ZTSS-0926-SM-59865 40-49 years, male 644.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

79.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 79.2
FF:10024-101D6 15,40,85 years, mixed 79.2

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