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LGALS3
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  • LGALS3
TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:829.5 nTPM
HPA:829.5 nTPM
GTEx:383.6 nTPM
FANTOM5:1669.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003162Antibody CAB005191
Endocrine cells Medium-
Enterocytes Medium-
Enterocytes - Microvilli Not detected-
Glandular cells -High
Goblet cells Medium-
Paneth cells Medium-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

829.5
overview
Male, age 65
Small intestine sample 232
nTPM: 779.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 1158.5
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 608.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 771.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

383.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 383.6
Samples: 187

Max nTPM: 1770.6
Min nTPM: 31.5
Std nTPM: 315.4
Median nTPM: 285.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1770.6
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1558.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1345.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1269.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1238.2
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 1093.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1036.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 1029.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 1020.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1008.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 926.7
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 919.2
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 906.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 904.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 870.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 864.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 832.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 814.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 798.9
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 795.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 784.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 774.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 769.7
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 759.9
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 749.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 748.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 741.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 737.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 737.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 731.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 730.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 719.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 697.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 691.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 682.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 678.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 670.1
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 659.5
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 645.5
GTEX-13113-1226-SM-5EGHT 60-69 years, female 622.4
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 606.8
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 605.2
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 595.7
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 582.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 562.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 556.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 552.2
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 551.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 548.6
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 537.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 522.0
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 504.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 491.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 491.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 488.2
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 481.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 467.2
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 466.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 464.4
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 460.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 454.6
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 443.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 437.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 428.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 427.7
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 420.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 405.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 404.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 402.3
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 401.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 395.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 377.6
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 377.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 366.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 361.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 360.2
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 356.7
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 355.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 354.9
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 353.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 352.1
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 345.3
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 343.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 338.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 327.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 321.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 321.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 304.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 302.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 294.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 291.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 290.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 288.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 285.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 284.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 275.1
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 274.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 260.4
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 253.7
GTEX-1C475-1426-SM-793CH 40-49 years, female 251.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 251.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 247.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 246.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 235.2
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 232.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 228.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 223.9
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 216.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 214.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 214.2
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 210.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 202.3
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 199.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 196.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 196.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 194.2
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 193.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 187.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 183.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 180.7
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 180.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 177.4
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 176.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 175.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 173.3
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 172.0
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 168.7
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 166.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 164.5
GTEX-1192X-2526-SM-59868 50-59 years, male 163.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 163.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 157.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 153.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 150.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 146.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 142.6
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 142.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 135.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 135.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 130.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 126.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 126.1
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 125.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 125.9
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 124.0
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 120.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 119.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 118.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 114.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 113.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 109.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 108.3
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 108.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 107.5
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 107.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 107.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 106.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 105.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 105.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 103.8
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 103.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 103.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 101.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 100.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 98.6
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 97.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 95.0
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 94.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 91.9
GTEX-183FY-1626-SM-793D8 20-29 years, male 90.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 89.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 89.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 86.1
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 84.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 82.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 82.8
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 82.3
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 81.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 80.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 77.8
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 77.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 76.4
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 76.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 67.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 64.2
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 45.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 31.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1669.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1669.0
FF:10024-101D6 15,40,85 years, mixed 1669.0

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