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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:265.0 nTPM
GTEx:265.0 nTPM
FANTOM5:374.7 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003162Antibody CAB005191
Squamous epithelial cells MediumMedium





VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

265.0
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 265.0
Samples: 156

Max nTPM: 497.3
Min nTPM: 116.6
Std nTPM: 79.8
Median nTPM: 242.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 497.3
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 496.9
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 483.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 471.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 470.7
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 447.6
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 445.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 431.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 430.2
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 416.7
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 408.8
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 405.4
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 401.8
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 398.5
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 383.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 378.8
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 372.6
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 372.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 365.4
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 364.5
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 359.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 352.3
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 352.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 345.3
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 340.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 337.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 334.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 331.4
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 330.0
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 328.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 327.5
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 325.0
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 322.5
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 322.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 320.5
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 318.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 316.8
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 316.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 315.6
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 313.3
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 305.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 303.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 303.0
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 301.8
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 299.9
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 299.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 298.2
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 297.7
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 297.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 288.4
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 288.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 288.1
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 288.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 280.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 276.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 275.1
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 273.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 272.6
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 268.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 267.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 266.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 266.7
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 265.6
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 264.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 262.0
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 261.2
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 260.1
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 259.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 258.5
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 253.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 252.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 250.4
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 250.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 249.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 248.1
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 245.8
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 244.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 243.4
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 241.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 240.9
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 240.4
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 239.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 239.4
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 239.2
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 239.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 238.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 238.7
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 237.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 237.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 235.9
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 235.8
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 234.5
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 234.1
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 233.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 232.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 230.6
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 230.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 228.8
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 227.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 224.9
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 223.9
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 223.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 223.4
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 222.3
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 222.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 221.3
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 220.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 219.3
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 218.8
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 214.8
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 213.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 212.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 212.1
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 211.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 211.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 211.7
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 211.3
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 209.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 208.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 207.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 206.7
GTEX-QCQG-1226-SM-48U23 50-59 years, female 206.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 205.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 201.4
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 200.5
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 200.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 195.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 195.5
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 194.8
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 194.7
GTEX-16NPV-2526-SM-6M483 50-59 years, female 193.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 191.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 186.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 185.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 184.1
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 182.1
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 181.8
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 180.3
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 180.0
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 178.2
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 175.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 174.4
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 174.3
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 172.5
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 171.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 171.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 167.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 164.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 164.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 162.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 162.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 155.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 150.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 149.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 127.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 116.6
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

374.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 374.7
FF:10204-103F6 68 years, female 374.7

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