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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:424.9 nTPM
HPA Brain:373.3 nTPM
GTEx:424.9 nTPM
FANTOM5:317.6 Scaled Tags Per Million
Pig:5.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

373.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 368.3
1981 Female, age 72, midline 505.9
2565 Male, age 75, midline 374.9
2194 Female, age 79, both hemispheres 359.2
2816 Male, age 47, midline 336.2
2048 Male, age 55, midline 265.5
Cervical spinal cord, dorsal horn
nTPM: 373.3
2173 Female, age 72, unknown 460.9
2069 Male, age 47, both hemispheres 417.2
2296 Male, age 66, both hemispheres 411.5
1877 Male, age 55, unknown 336.3
2297 Male, age 75, both hemispheres 311.0
2721 Male, age 90, both hemispheres 302.6
Cervical spinal cord, ventral horn
nTPM: 357.2
2098 Female, age 72, unknown 526.0
2809 Male, age 90, both hemispheres 430.7
2480 Male, age 75, both hemispheres 345.2
2068 Male, age 55, unknown 323.5
2295 Male, age 66, both hemispheres 268.1
2820 Female, age 79, both hemispheres 249.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

424.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 424.9
Samples: 159

Max nTPM: 980.7
Min nTPM: 179.0
Std nTPM: 125.5
Median nTPM: 395.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 980.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 832.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 813.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 751.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 733.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 723.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 701.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 699.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 693.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 660.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 654.7
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 642.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 623.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 619.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 602.2
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 581.2
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 577.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 577.2
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 575.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 556.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 550.7
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 549.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 545.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 540.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 538.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 536.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 533.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 522.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 520.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 517.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 516.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 511.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 508.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 499.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 496.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 492.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 488.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 485.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 484.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 483.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 476.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 475.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 471.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 467.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 466.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 464.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 463.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 455.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 445.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 443.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 442.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 440.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 437.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 434.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 433.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 432.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 429.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 428.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 426.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 425.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 423.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 423.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 422.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 421.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 418.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 418.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 415.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 413.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 412.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 410.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 410.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 410.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 405.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 404.0
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 402.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 401.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 400.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 397.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 395.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 395.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 393.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 392.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 391.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 390.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 389.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 389.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 389.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 389.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 389.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 387.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 386.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 385.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 385.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 384.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 383.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 383.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 382.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 380.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 379.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 377.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 376.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 375.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 374.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 374.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 371.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 367.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 367.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 366.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 366.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 362.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 357.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 357.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 353.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 351.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 348.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 348.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 342.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 340.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 339.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 338.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 333.7
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 326.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 325.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 324.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 323.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 321.2
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 319.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 318.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 317.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 317.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 316.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 315.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 312.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 311.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 311.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 310.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 306.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 301.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 301.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 300.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 299.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 298.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 297.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 295.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 293.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 291.1
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 290.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 289.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 287.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 285.0
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 278.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 278.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 276.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 273.2
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 270.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 262.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 258.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 253.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 179.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

317.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 317.6
FF:10181-103D1 60 years, female 383.5
FF:10159-103A6 76 years, female 251.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

5.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 4.1
Samples: 4

Max nTPM: 5.3
Min nTPM: 2.2
Sample A Female 5.3
Sample B Female 4.5
Sample C Male 2.2
Sample D Male 4.2
Ventral spinal cord
nTPM: 5.4
Samples: 4

Max nTPM: 6.9
Min nTPM: 3.7
Sample A Female 3.7
Sample B Female 6.9
Sample C Male 4.0
Sample D Male 6.8

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