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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:209.8 nTPM
GTEx:209.8 nTPM
FANTOM5:57.2 Scaled Tags Per Million
Pig:207.8 nTPM
Mouse:237.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

209.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 209.8
Samples: 105

Max nTPM: 470.3
Min nTPM: 71.2
Std nTPM: 82.6
Median nTPM:
218_1 71 years, female 470.3
317_1 60 years, male 432.5
347_1 72 years, male 409.8
352_1 62 years, male 394.5
354_1 81 years, female 388.1
350_1 84 years, female 386.8
99_1 64 years, male 378.7
379_1 60 years, male 366.2
356_1 87 years, female 362.7
355_1 70 years, female 359.7
172_1 72 years, female 349.8
349_1 83 years, male 337.3
447_1 81 years, male 330.0
243_1 75 years, male 324.0
173_1 67 years, male 315.3
394_1 75 years, female 305.9
386_1 76 years, male 292.2
351_1 91 years, male 291.1
375_1 74 years, female 283.4
237_1 82 years, male 278.8
452_1 88 years, female 276.5
295_1 61 years, female 271.9
335_1 73 years, female 257.1
6_1 73 years, female 254.3
291_1 76 years, male 250.7
286_1 68 years, female 249.0
506_1 65 years, male 247.5
319_1 81 years, male 246.7
353_1 82 years, female 238.2
229_1 69 years, female 236.6
318_1 68 years, male 236.0
42_1 85 years, male 232.0
115_1 83 years, male 231.5
41_1 94 years, female 219.2
384_1 83 years, male 218.1
321_1 62 years, female 214.6
119_1 70 years, female 213.2
177_1 74 years, male 211.7
117_1 61 years, male 210.3
266_1 85 years, male 207.7
32_1 67 years, male 205.1
120_1 70 years, female 194.7
163_1 78 years, male 193.7
404_1 82 years, female 193.6
162_1 79 years, female 192.2
217_1 76 years, male 189.4
9_1 66 years, female 188.5
288_1 66 years, female 187.7
292_1 71 years, male 186.8
265_1 87 years, male 186.5
348_1 84 years, male 186.3
396_1 62 years, male 186.3
145_1 84 years, male 185.6
314_1 67 years, male 185.5
503_1 68 years, male 184.2
315_1 62 years, female 182.7
324_1 76 years, male 180.7
109_1 81 years, female 180.1
264_1 73 years, female 178.4
313_1 79 years, female 178.4
480_1 63 years, male 177.7
137_1 83 years, male 176.6
517_1 88 years, male 173.8
425_1 59 years, female 173.3
468_1 89 years, male 172.7
35_1 74 years, female 172.4
311_1 78 years, male 171.7
43_1 64 years, female 170.4
142_1 61 years, female 170.0
376_1 75 years, female 168.9
254_1 77 years, female 168.7
189_1 76 years, male 166.4
307_1 66 years, female 166.0
526_1 61 years, male 165.5
322_1 76 years, male 164.6
251_1 78 years, male 164.2
415_1 77 years, female 162.8
499_1 55 years, female 162.1
389_1 86 years, female 158.8
320_1 89 years, female 157.3
308_1 70 years, female 156.0
293_1 68 years, female 155.6
89_1 63 years, male 149.0
377_1 82 years, female 147.4
81_1 67 years, male 147.0
405_1 91 years, male 141.9
246_1 77 years, male 141.7
406_1 79 years, male 140.1
18_1 88 years, male 139.1
153_1 70 years, female 135.6
466_1 57 years, female 130.4
126_1 63 years, male 130.2
149_1 88 years, male 129.6
316_1 62 years, male 129.0
414_1 84 years, female 127.7
490_1 67 years, female 126.3
4_1 88 years, female 125.9
518_1 75 years, female 116.5
17_1 71 years, male 114.7
491_1 89 years, female 102.6
2_1 77 years, female 99.4
413_1 59 years, female 96.8
495_1 57 years, female 95.4
139_1 64 years, female 91.1
501_1 88 years, male 71.2
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

57.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 57.2
FF:10030-101E3 24-65 years, mixed 57.2

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

207.8
Pig sample Sample description nTPM
Retina
nTPM: 207.8
Samples: 4

Max nTPM: 233.2
Min nTPM: 191.5
Sample A Female 194.4
Sample B Female 191.5
Sample C Male 233.2
Sample D Male 212.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

237.0
Mouse sample Sample description nTPM
Retina
nTPM: 237.1
Samples: 4

Max nTPM: 268.4
Min nTPM: 219.6
Sample A Male 225.8
Sample B Male 268.4
Sample C Female 219.6
Sample D Female 234.4

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