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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:2093.2 nTPM
FANTOM5:983.1 Scaled Tags Per Million
Pig:998.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA039437Antibody HPA073929Antibody CAB008364
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedMediumNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2093.2
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2093.2
Samples: 246

Max nTPM: 5301.3
Min nTPM: 894.0
Std nTPM: 527.3
Median nTPM: 1999.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 5301.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 4077.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 3817.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 3779.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 3655.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 3523.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 3351.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 3309.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 3263.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 3258.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 3152.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 3037.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 3014.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2984.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 2958.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 2852.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 2823.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 2812.9
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 2811.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 2777.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2774.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 2738.7
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 2709.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 2658.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 2640.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 2638.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 2636.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 2636.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 2633.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 2628.1
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 2624.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 2623.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 2610.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 2601.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 2579.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 2550.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 2548.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 2537.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 2533.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 2521.1
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 2517.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 2498.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 2495.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 2480.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 2480.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2476.7
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 2473.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 2467.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2463.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 2459.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 2449.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 2449.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2423.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 2421.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 2413.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 2405.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 2401.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2396.9
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 2387.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 2370.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 2356.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 2353.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 2348.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 2340.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 2334.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 2306.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 2306.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 2266.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 2257.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 2252.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 2248.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 2245.4
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 2239.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 2237.4
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 2232.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 2225.1
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 2215.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 2214.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 2211.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 2202.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 2195.9
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 2183.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 2171.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 2165.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2163.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 2160.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 2154.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 2153.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 2152.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2123.7
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 2123.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 2118.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 2118.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 2112.4
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 2112.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 2103.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 2100.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 2096.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 2095.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 2087.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 2083.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 2069.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 2064.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 2063.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 2058.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2058.8
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 2057.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 2053.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 2050.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 2046.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 2041.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 2033.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 2032.3
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 2031.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 2029.0
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 2024.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 2024.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 2018.5
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 2016.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 2014.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 2010.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 2009.0
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 2000.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1998.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1997.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1995.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 1993.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1989.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1985.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 1984.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1980.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1979.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1976.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1964.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1957.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1952.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 1952.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1948.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1940.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1936.9
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 1934.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1934.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1933.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1930.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1921.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1914.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1905.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1902.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1899.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1894.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1892.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1892.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1891.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1878.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1877.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1867.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1867.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1865.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1861.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1858.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1851.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1845.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1845.0
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1839.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1839.1
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1838.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1837.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1832.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1831.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1830.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1829.9
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1820.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 1819.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1817.5
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1813.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1801.6
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 1797.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 1795.5
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1788.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 1787.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1786.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 1784.7
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1774.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1768.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1762.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1760.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1759.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1752.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 1744.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1740.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 1740.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1736.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 1733.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1722.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 1719.8
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 1717.5
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 1713.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1706.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1704.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 1703.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1699.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1697.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1695.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1687.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1686.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 1685.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1678.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1671.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1669.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1665.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1646.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 1640.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1621.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1617.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 1613.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 1611.3
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1608.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1593.7
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1582.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1568.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1550.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1540.9
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1538.6
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1523.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1500.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1497.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 1491.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1482.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1476.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1453.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1446.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1445.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1420.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 1417.1
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 1402.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1397.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1384.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1367.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 1357.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1345.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 1331.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 1322.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1267.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 1244.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1236.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 894.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

983.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 983.1
FF:10164-103B2 76 years, female 983.1

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

998.1
Pig sample Sample description nTPM
Caudate
nTPM: 998.2
Samples: 4

Max nTPM: 1063.7
Min nTPM: 943.8
Sample A Female 1035.8
Sample B Female 949.3
Sample C Male 1063.7
Sample D Male 943.8

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