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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:235.9 nTPM
HPA Brain:236.6 nTPM
GTEx:235.9 nTPM
FANTOM5:264.7 Scaled Tags Per Million
Pig:319.2 nTPM
Mouse:393.3 nTPM
Allen mouse:2.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

236.6
Sample id Sample description nTPM
Amygdala
nTPM: 236.6
2814 Male, age 76, right hemisphere 277.0
2514 Male, age 75, right hemisphere 248.2
2695 Female, age 67, right hemisphere 222.6
1987 Female, age 91, left hemisphere 222.3
2517 Female, age 94, left hemisphere 213.1
Basal amygdala
nTPM: 226.5
2110 Male, age 80, left hemisphere 294.1
2685 Female, age 94, left hemisphere 226.5
1955 Male, age 76, both hemispheres 219.9
2609 Male, age 75, right hemisphere 209.2
2243 Female, age 91, right hemisphere 206.4
2827 Female, age 67, right hemisphere 203.1
Central amygdala
nTPM: 224.2
2826 Female, age 94, left hemisphere 253.3
1905 Male, age 76, both hemispheres 235.5
2239 Male, age 80, left hemisphere 224.7
2515 Male, age 75, right hemisphere 211.9
2701 Female, age 91, right hemisphere 195.4
Corticomedial amygdala
nTPM: 220.1
2829 Male, age 80, left hemisphere 271.7
2240 Male, age 76, both hemispheres 224.4
2429 Female, age 94, left hemisphere 215.0
2428 Male, age 75, right hemisphere 214.6
2242 Female, age 91, right hemisphere 208.5
2535 Female, age 67, right hemisphere 186.3
Lateral amygdala
nTPM: 221.2
1883 Male, age 76, both hemispheres 244.6
2534 Female, age 94, left hemisphere 241.3
2516 Male, age 75, right hemisphere 239.7
2830 Female, age 67, right hemisphere 224.3
2256 Male, age 80, left hemisphere 189.9
2255 Female, age 91, right hemisphere 187.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

235.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 235.9
Samples: 152

Max nTPM: 414.6
Min nTPM: 91.9
Std nTPM: 52.7
Median nTPM: 226.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 414.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 383.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 382.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 372.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 370.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 361.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 342.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 338.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 337.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 333.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 322.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 322.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 316.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 316.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 312.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 306.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 301.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 299.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 298.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 292.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 290.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 290.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 289.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 289.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 289.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 287.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 284.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 280.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 277.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 276.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 276.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 274.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 274.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 269.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 269.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 269.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 268.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 268.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 266.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 264.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 256.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 255.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 254.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 254.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 253.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 253.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 253.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 253.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 253.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 249.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 249.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 245.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 244.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 242.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 241.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 240.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 239.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 239.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 239.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 239.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 238.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 236.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 235.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 234.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 233.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 231.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 231.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 231.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 231.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 230.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 230.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 229.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 228.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 227.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 227.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 226.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 226.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 226.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 226.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 223.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 223.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 222.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 221.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 221.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 221.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 220.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 219.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 219.5
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 219.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 217.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 217.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 216.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 214.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 213.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 212.0
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 211.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 210.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 210.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 210.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 208.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 208.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 207.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 207.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 207.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 207.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 205.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 205.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 205.3
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 203.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 201.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 201.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 200.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 200.4
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 200.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 197.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 197.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 197.0
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 196.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 196.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 195.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 195.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 194.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 194.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 193.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 193.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 192.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 190.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 189.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 189.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 187.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 186.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 185.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 183.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 182.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 180.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 179.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 178.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 178.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 178.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 178.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 177.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 176.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 176.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 173.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 172.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 169.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 160.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 158.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 155.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 146.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 144.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 91.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

264.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 264.7
FF:10151-102I7 76 years, female 264.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

319.2
Pig sample Sample description nTPM
Amygdala
nTPM: 319.2
Samples: 4

Max nTPM: 433.3
Min nTPM: 260.1
Sample A Female 433.3
Sample B Female 313.2
Sample C Male 260.1
Sample D Male 270.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

393.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 393.4
Samples: 4

Max nTPM: 404.4
Min nTPM: 380.0
Sample A Male 404.2
Sample B Male 404.4
Sample C Female 380.0
Sample D Female 384.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.9
1130 Antisense, RP_Baylor_103129, Mouse strain C57BL/6J (56 days, male) 8.6
1131 Antisense, RP_Baylor_103129, Mouse strain C57BL/6J (56 days, male) 7.0
70566163 Antisense, RP_050628_02_D11, Mouse strain C57BL/6J (56 days, male) 0.0
73931419 Antisense, RP_051214_04_E11, Mouse strain C57BL/6J (56 days, male) 0.0

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