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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:365.9 nTPM
HPA Brain:215.8 nTPM
GTEx:365.9 nTPM
FANTOM5:12.8 Scaled Tags Per Million
Pig:196.6 nTPM
Mouse:200.2 nTPM
Allen mouse:21.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

215.8
Sample id Sample description nTPM
Amygdala
nTPM: 206.2
2695 Female, age 67, right hemisphere 287.5
2514 Male, age 75, right hemisphere 198.7
1987 Female, age 91, left hemisphere 196.6
2814 Male, age 76, right hemisphere 185.9
2517 Female, age 94, left hemisphere 162.1
Basal amygdala
nTPM: 181.3
2827 Female, age 67, right hemisphere 265.9
2609 Male, age 75, right hemisphere 180.7
1955 Male, age 76, both hemispheres 168.2
2110 Male, age 80, left hemisphere 162.0
2685 Female, age 94, left hemisphere 161.0
2243 Female, age 91, right hemisphere 149.8
Central amygdala
nTPM: 207.2
2826 Female, age 94, left hemisphere 314.1
2515 Male, age 75, right hemisphere 204.7
2701 Female, age 91, right hemisphere 178.6
2239 Male, age 80, left hemisphere 176.9
1905 Male, age 76, both hemispheres 161.6
Corticomedial amygdala
nTPM: 177.7
2535 Female, age 67, right hemisphere 202.4
2428 Male, age 75, right hemisphere 195.2
2240 Male, age 76, both hemispheres 188.4
2829 Male, age 80, left hemisphere 169.3
2242 Female, age 91, right hemisphere 162.4
2429 Female, age 94, left hemisphere 148.4
Lateral amygdala
nTPM: 215.8
2830 Female, age 67, right hemisphere 349.7
2516 Male, age 75, right hemisphere 237.0
2534 Female, age 94, left hemisphere 206.7
1883 Male, age 76, both hemispheres 183.5
2256 Male, age 80, left hemisphere 165.3
2255 Female, age 91, right hemisphere 152.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

365.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 365.9
Samples: 152

Max nTPM: 643.2
Min nTPM: 223.4
Std nTPM: 88.8
Median nTPM: 338.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 643.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 621.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 619.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 605.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 597.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 570.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 551.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 551.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 549.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 527.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 515.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 505.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 505.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 504.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 503.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 501.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 498.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 490.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 482.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 479.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 477.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 465.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 465.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 462.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 461.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 459.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 453.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 451.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 440.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 438.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 437.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 425.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 425.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 425.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 421.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 421.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 419.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 414.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 414.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 414.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 411.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 411.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 407.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 406.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 403.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 393.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 391.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 389.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 386.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 384.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 381.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 381.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 381.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 380.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 379.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 376.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 375.6
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 374.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 367.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 360.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 356.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 356.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 355.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 354.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 354.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 348.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 345.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 345.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 344.9
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 344.5
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 343.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 343.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 342.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 342.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 341.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 340.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 336.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 335.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 335.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 334.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 333.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 331.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 331.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 331.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 330.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 329.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 329.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 326.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 326.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 325.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 325.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 323.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 321.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 320.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 320.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 318.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 318.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 315.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 315.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 315.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 314.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 314.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 313.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 313.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 312.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 312.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 312.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 310.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 308.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 308.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 307.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 307.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 306.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 304.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 304.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 303.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 300.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 299.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 299.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 298.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 298.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 296.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 294.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 294.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 293.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 291.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 291.4
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 290.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 288.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 285.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 282.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 281.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 278.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 274.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 272.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 272.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 271.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 270.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 267.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 267.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 266.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 264.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 262.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 261.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 259.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 257.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 256.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 252.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 248.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 248.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 245.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 223.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

12.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 12.8
FF:10151-102I7 76 years, female 12.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

196.6
Pig sample Sample description nTPM
Amygdala
nTPM: 196.6
Samples: 4

Max nTPM: 238.7
Min nTPM: 172.0
Sample A Female 238.7
Sample B Female 201.0
Sample C Male 174.6
Sample D Male 172.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 200.2
Samples: 4

Max nTPM: 218.3
Min nTPM: 186.2
Sample A Male 218.3
Sample B Male 186.2
Sample C Female 194.8
Sample D Female 201.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

21.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 21.0
71232800 Antisense, RP_050503_02_A03, Mouse strain C57BL/6J (56 days, male) 21.0

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