MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:742.5 nTPM
HPA Brain:1077.3 nTPM
GTEx:742.5 nTPM
FANTOM5:550.7 Scaled Tags Per Million
Pig:497.5 nTPM
Mouse:354.2 nTPM
Allen mouse:20.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 1077.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 828.7
2586 Male, age 75, left hemisphere 1354.6
2828 Female, age 72, unknown 1121.4
1827 Male, age 72, unknown 977.9
2666 Male, age 74, left hemisphere 898.4
1870 Female, age 42, unknown 838.2
2219 Male, age 76, both hemispheres 823.0
1833 Male, age 53, unknown 689.8
2411 Female, age 72, unknown 647.9
1830 Male, age 51, unknown 581.7
2019 Male, age 18, unknown 353.8
Dorsal raphe nucleus
nTPM: 926.1
2016 Female, age 72, unknown 1112.0
2047 Male, age 72, unknown 1100.8
2298 Female, age 72, unknown 979.7
1828 Male, age 53, unknown 847.6
2750 Male, age 76, both hemispheres 590.1
Inferior colliculus
nTPM: 1029.5
2849 Male, age 72, unknown 1133.8
1848 Female, age 42, unknown 1058.8
1890 Male, age 53, unknown 986.6
2097 Female, age 72, unknown 938.8
Median raphe nucleus
nTPM: 664.5
2220 Male, age 76, midline 664.5
Periaquaductal grey, anterior
nTPM: 945.1
1795 Male, age 51, unknown 1132.3
1947 Male, age 18, unknown 925.3
2502 Female, age 75, unknown 777.7
Periaquaductal grey, dorsal
nTPM: 1077.3
1840 Male, age 53, unknown 1432.5
1831 Male, age 72, unknown 1068.4
2850 Male, age 76, both hemispheres 970.4
2464 Female, age 72, unknown 838.0
Periaquaductal grey, lateral
nTPM: 1032.7
2053 Male, age 18, unknown 1293.0
2140 Male, age 76, both hemispheres 944.6
2272 Male, age 74, both hemispheres 860.4
Pretectal area
nTPM: 794.1
2825 Male, age 18, unknown 1171.8
2224 Female, age 72, unknown 1053.7
1944 Female, age 72, unknown 867.9
1816 Male, age 51, unknown 839.9
2667 Female, age 75, unknown 810.1
2273 Male, age 74, both hemispheres 741.4
1817 Female, age 42, unknown 723.5
1815 Male, age 53, unknown 700.3
2407 Male, age 75, both hemispheres 686.1
2316 Male, age 76, right hemisphere 640.6
2007 Male, age 72, unknown 500.3
Red nucleus
nTPM: 594.2
2725 Female, age 75, unknown 841.8
2503 Female, age 72, unknown 760.9
2769 Male, age 72, unknown 676.6
2227 Male, age 72, unknown 670.2
2588 Male, age 74, left hemisphere 610.2
1821 Female, age 72, unknown 608.2
2584 Male, age 75, left hemisphere 592.6
1954 Female, age 42, unknown 558.6
2823 Male, age 76, right hemisphere 515.2
1904 Male, age 53, unknown 481.3
1865 Male, age 51, unknown 450.6
2785 Male, age 18, unknown 363.8
Substantia nigra
nTPM: 847.5
2699 Male, age 18, unknown 1355.4
1916 Female, age 42, unknown 1064.0
2665 Male, age 74, both hemispheres 919.1
1851 Male, age 51, unknown 889.0
2583 Male, age 75, right hemisphere 828.4
1941 Male, age 53, unknown 730.7
1889 Female, age 72, unknown 727.1
2590 Female, age 75, unknown 723.9
2241 Male, age 72, unknown 697.7
2409 Female, age 72, unknown 539.9
Superior colliculus
nTPM: 843.5
2664 Male, age 75, both hemispheres 1269.0
1796 Male, age 53, unknown 1039.0
2261 Male, age 18, unknown 921.2
1839 Male, age 51, unknown 919.4
2087 Female, age 72, unknown 837.8
1913 Female, age 42, unknown 763.7
2668 Female, age 75, unknown 739.8
2587 Male, age 74, left hemisphere 718.5
1995 Male, age 72, unknown 653.7
1895 Male, age 76, right hemisphere 573.0
Ventral tegmental area
nTPM: 823.4
1915 Female, age 42, unknown 1000.3
2021 Male, age 53, unknown 897.0
1942 Male, age 51, unknown 888.0
2218 Male, age 76, both hemispheres 773.0
2223 Female, age 72, unknown 698.1
2410 Female, age 72, unknown 684.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 742.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 742.5
Samples: 139

Max nTPM: 2032.8
Min nTPM: 97.2
Std nTPM: 352.2
Median nTPM: 719.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 2032.8
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 1893.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 1689.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 1547.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 1541.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 1475.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 1397.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1388.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 1362.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1348.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 1343.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 550.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 550.7
FF:10158-103A5 76 years, female 550.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 497.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 409.3
Samples: 4

Max nTPM: 530.1
Min nTPM: 325.5
Sample A Female 530.1
Sample B Female 375.4
Sample C Male 406.1
Sample D Male 325.5
Midbrain
nTPM: 497.4
Samples: 4

Max nTPM: 686.4
Min nTPM: 281.6
Sample A Female 633.2
Sample B Female 281.6
Sample C Male 686.4
Sample D Male 388.5
Periaqueductal gray
nTPM: 354.8
Samples: 3

Max nTPM: 430.2
Min nTPM: 303.2
Sample B Female 303.2
Sample C Male 430.2
Sample D Male 331.1
Superior colliculi
nTPM: 457.1
Samples: 4

Max nTPM: 566.7
Min nTPM: 392.0
Sample A Female 462.1
Sample B Female 407.4
Sample C Male 566.7
Sample D Male 392.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 354.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 354.2
Samples: 4

Max nTPM: 384.1
Min nTPM: 332.7
Sample A Male 384.1
Sample B Male 339.4
Sample C Female 332.7
Sample D Female 360.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 20.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 20.3
67936207 Antisense, RP_040928_01_A06, Mouse strain C57BL/6J (56 days, male) 24.3
68196976 Antisense, RP_040928_01_A06, Mouse strain C57BL/6J (56 days, male) 19.9
77414652 Antisense, RP_070205_01_H10, Mouse strain C57BL/6J (56 days, male) 16.3

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