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TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:280.3 nTPM
HPA Brain:976.0 nTPM
GTEx:280.3 nTPM
FANTOM5:1113.6 Scaled Tags Per Million
Pig:460.2 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

976.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 839.7
1981 Female, age 72, midline 984.5
2565 Male, age 75, midline 868.8
2048 Male, age 55, midline 822.3
2816 Male, age 47, midline 777.1
2194 Female, age 79, both hemispheres 746.0
Cervical spinal cord, dorsal horn
nTPM: 812.9
2173 Female, age 72, unknown 1050.9
2721 Male, age 90, both hemispheres 1027.2
1877 Male, age 55, unknown 920.8
2297 Male, age 75, both hemispheres 678.0
2069 Male, age 47, both hemispheres 649.3
2296 Male, age 66, both hemispheres 551.5
Cervical spinal cord, ventral horn
nTPM: 976.0
2809 Male, age 90, both hemispheres 1458.8
2295 Male, age 66, both hemispheres 1344.4
2098 Female, age 72, unknown 906.6
2480 Male, age 75, both hemispheres 829.1
2068 Male, age 55, unknown 669.6
2820 Female, age 79, both hemispheres 647.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

280.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 280.3
Samples: 159

Max nTPM: 778.9
Min nTPM: 89.2
Std nTPM: 133.0
Median nTPM: 249.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 778.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 728.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 702.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 650.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 640.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 637.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 553.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 545.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 541.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 521.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 503.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 458.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 454.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 447.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 445.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 444.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 444.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 444.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 434.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 433.6
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 422.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 415.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 409.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 404.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 395.2
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 389.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 386.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 383.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 383.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 383.2
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 379.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 376.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 374.8
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 367.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 365.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 362.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 362.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 360.3
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 360.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 358.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 357.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 352.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 344.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 341.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 332.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 332.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 331.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 330.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 323.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 320.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 320.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 317.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 317.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 310.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 308.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 307.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 304.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 303.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 301.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 299.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 294.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 287.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 283.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 283.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 283.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 277.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 276.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 276.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 273.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 269.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 266.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 264.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 261.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 257.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 256.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 256.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 255.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 253.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 252.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 249.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 249.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 248.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 248.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 246.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 245.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 244.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 244.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 241.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 240.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 236.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 234.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 234.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 233.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 232.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 231.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 230.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 229.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 226.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 224.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 218.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 218.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 216.6
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 214.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 213.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 213.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 212.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 211.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 206.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 204.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 202.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 202.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 198.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 197.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 197.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 196.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 193.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 192.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 191.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 191.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 188.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 187.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 186.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 183.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 183.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 182.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 179.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 175.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 174.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 173.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 172.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 169.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 164.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 160.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 159.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 159.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 152.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 149.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 149.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 147.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 143.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 141.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 135.8
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 134.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 134.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 133.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 125.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 118.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 116.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 109.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 109.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 107.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 100.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 100.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 98.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 96.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 92.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 91.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 89.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 89.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1113.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1113.6
FF:10181-103D1 60 years, female 1453.6
FF:10159-103A6 76 years, female 773.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

460.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 399.3
Samples: 4

Max nTPM: 426.7
Min nTPM: 374.3
Sample A Female 408.1
Sample B Female 426.7
Sample C Male 387.9
Sample D Male 374.3
Ventral spinal cord
nTPM: 460.2
Samples: 4

Max nTPM: 485.1
Min nTPM: 422.4
Sample A Female 453.0
Sample B Female 485.1
Sample C Male 422.4
Sample D Male 480.2

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