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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:320.3 nTPM
HPA:110.0 nTPM
GTEx:320.3 nTPM
FANTOM5:230.7 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.0
overview
Male, age 65
Small intestine sample 232
nTPM: 51.8
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 218.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 106
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 63.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

320.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 320.3
Samples: 187

Max nTPM: 1573.5
Min nTPM: 33.9
Std nTPM: 276.6
Median nTPM: 213.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1573.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 1346.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1061.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1055.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 1016.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 948.5
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 944.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 896.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 892.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 878.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 866.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 849.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 847.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 837.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 819.9
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 805.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 805.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 803.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 791.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 757.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 745.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 731.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 689.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 682.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 651.2
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 648.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 647.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 630.8
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 625.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 618.3
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 618.0
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 615.1
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 603.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 584.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 572.0
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 543.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 542.1
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 531.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 529.0
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 509.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 498.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 493.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 460.7
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 447.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 439.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 438.9
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 429.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 413.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 398.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 390.8
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 389.7
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 377.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 374.8
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 371.2
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 362.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 358.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 356.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 355.8
GTEX-14PKU-1626-SM-6871C 40-49 years, female 346.2
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 341.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 340.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 329.9
GTEX-13113-1226-SM-5EGHT 60-69 years, female 328.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 325.5
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 304.8
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 303.4
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 294.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 289.5
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 287.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 285.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 282.5
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 276.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 273.3
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 273.0
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 271.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 266.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 264.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 263.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 259.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 257.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 255.9
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 244.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 242.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 240.0
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 236.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 234.2
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 234.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 232.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 230.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 225.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 220.1
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 219.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 215.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 213.1
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 212.3
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 211.7
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 207.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 206.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 205.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 203.8
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 199.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 198.5
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 197.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 194.6
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 192.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 182.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 181.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 177.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 175.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 173.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 172.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 171.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 171.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 168.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 166.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 165.4
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 163.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 163.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 161.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 159.8
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 159.8
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 159.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 158.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 154.7
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 150.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 149.6
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 149.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 146.8
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 145.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 145.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 144.4
GTEX-1192X-2526-SM-59868 50-59 years, male 144.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 141.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 140.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 139.2
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 130.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 130.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 127.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 125.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 121.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 117.5
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 117.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 116.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 115.0
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 114.4
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 112.9
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 111.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 111.4
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 107.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 107.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 106.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 106.5
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 104.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 104.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 102.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 99.1
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 98.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 98.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 98.1
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 94.5
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 94.3
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 92.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 91.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 88.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 88.0
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 88.0
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 86.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 86.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 84.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 80.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 75.8
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 75.7
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 74.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 74.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 72.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 72.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 68.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 68.2
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 66.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 63.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 60.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 58.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 47.9
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 45.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 43.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 38.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 33.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

230.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 230.7
FF:10024-101D6 15,40,85 years, mixed 230.7

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