MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:225.2 nTPM
HPA Brain:206.2 nTPM
GTEx:225.2 nTPM
FANTOM5:477.3 Scaled Tags Per Million
Pig:154.1 nTPM
Mouse:96.2 nTPM
Allen mouse:4.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 206.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 189.8
2586 Male, age 75, left hemisphere 246.2
2411 Female, age 72, unknown 218.1
1870 Female, age 42, unknown 210.3
1830 Male, age 51, unknown 201.2
1833 Male, age 53, unknown 190.7
2828 Female, age 72, unknown 186.6
1827 Male, age 72, unknown 181.8
2019 Male, age 18, unknown 180.3
2666 Male, age 74, left hemisphere 163.2
2219 Male, age 76, both hemispheres 119.8
Dorsal raphe nucleus
nTPM: 159.0
2750 Male, age 76, both hemispheres 197.2
1828 Male, age 53, unknown 156.2
2047 Male, age 72, unknown 152.1
2298 Female, age 72, unknown 146.5
2016 Female, age 72, unknown 143.1
Inferior colliculus
nTPM: 144.2
2849 Male, age 72, unknown 154.0
1848 Female, age 42, unknown 145.2
1890 Male, age 53, unknown 144.5
2097 Female, age 72, unknown 133.0
Median raphe nucleus
nTPM: 139.9
2220 Male, age 76, midline 139.9
Periaquaductal grey, anterior
nTPM: 171.7
1947 Male, age 18, unknown 176.4
2502 Female, age 75, unknown 174.7
1795 Male, age 51, unknown 163.9
Periaquaductal grey, dorsal
nTPM: 132.6
2464 Female, age 72, unknown 152.5
1831 Male, age 72, unknown 130.7
2850 Male, age 76, both hemispheres 130.0
1840 Male, age 53, unknown 117.2
Periaquaductal grey, lateral
nTPM: 140.6
2053 Male, age 18, unknown 152.7
2140 Male, age 76, both hemispheres 141.7
2272 Male, age 74, both hemispheres 127.3
Pretectal area
nTPM: 165.2
2407 Male, age 75, both hemispheres 191.8
2007 Male, age 72, unknown 182.0
1817 Female, age 42, unknown 173.8
1815 Male, age 53, unknown 172.5
2316 Male, age 76, right hemisphere 171.6
2825 Male, age 18, unknown 170.6
2667 Female, age 75, unknown 165.0
1944 Female, age 72, unknown 160.3
1816 Male, age 51, unknown 157.1
2224 Female, age 72, unknown 140.8
2273 Male, age 74, both hemispheres 132.0
Red nucleus
nTPM: 206.2
1865 Male, age 51, unknown 232.1
2584 Male, age 75, left hemisphere 231.4
1904 Male, age 53, unknown 222.5
2769 Male, age 72, unknown 206.9
2823 Male, age 76, right hemisphere 206.2
2227 Male, age 72, unknown 205.3
2785 Male, age 18, unknown 203.6
2588 Male, age 74, left hemisphere 199.0
1821 Female, age 72, unknown 198.9
2503 Female, age 72, unknown 198.1
1954 Female, age 42, unknown 189.3
2725 Female, age 75, unknown 181.0
Substantia nigra
nTPM: 155.3
2583 Male, age 75, right hemisphere 207.9
1889 Female, age 72, unknown 176.7
1851 Male, age 51, unknown 162.4
2590 Female, age 75, unknown 158.9
2409 Female, age 72, unknown 156.8
2699 Male, age 18, unknown 151.8
1941 Male, age 53, unknown 149.4
1916 Female, age 42, unknown 134.9
2665 Male, age 74, both hemispheres 132.4
2241 Male, age 72, unknown 121.7
Superior colliculus
nTPM: 182.2
1913 Female, age 42, unknown 228.7
1995 Male, age 72, unknown 206.6
2664 Male, age 75, both hemispheres 206.1
2668 Female, age 75, unknown 194.2
1796 Male, age 53, unknown 177.6
1895 Male, age 76, right hemisphere 173.3
2261 Male, age 18, unknown 164.8
1839 Male, age 51, unknown 160.0
2087 Female, age 72, unknown 156.7
2587 Male, age 74, left hemisphere 154.3
Ventral tegmental area
nTPM: 162.7
2223 Female, age 72, unknown 194.1
2410 Female, age 72, unknown 173.3
2021 Male, age 53, unknown 165.7
1942 Male, age 51, unknown 155.8
1915 Female, age 42, unknown 145.4
2218 Male, age 76, both hemispheres 142.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 225.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 225.2
Samples: 139

Max nTPM: 712.3
Min nTPM: 111.8
Std nTPM: 92.2
Median nTPM: 197.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 712.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 571.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 479.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 478.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 473.8
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 473.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 468.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 388.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 376.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 375.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 372.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 477.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 477.3
FF:10158-103A5 76 years, female 477.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 154.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 154.1
Samples: 4

Max nTPM: 180.5
Min nTPM: 110.6
Sample A Female 175.0
Sample B Female 110.6
Sample C Male 150.4
Sample D Male 180.5
Midbrain
nTPM: 152.0
Samples: 4

Max nTPM: 212.4
Min nTPM: 119.9
Sample A Female 212.4
Sample B Female 152.7
Sample C Male 123.0
Sample D Male 119.9
Periaqueductal gray
nTPM: 124.8
Samples: 3

Max nTPM: 138.0
Min nTPM: 113.9
Sample B Female 138.0
Sample C Male 113.9
Sample D Male 122.4
Superior colliculi
nTPM: 132.9
Samples: 4

Max nTPM: 151.9
Min nTPM: 83.4
Sample A Female 150.1
Sample B Female 83.4
Sample C Male 146.1
Sample D Male 151.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 96.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 96.2
Samples: 4

Max nTPM: 100.7
Min nTPM: 92.4
Sample A Male 98.1
Sample B Male 92.4
Sample C Female 93.5
Sample D Female 100.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.9
564753 Antisense, RP_040826_01_C09, Mouse strain C57BL/6J (56 days, male) 4.9

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