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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:203.3 nTPM
FANTOM5:384.0 Scaled Tags Per Million
Pig:136.1 nTPM
Mouse:97.8 nTPM
Allen mouse:2.8 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 148.1
2032 Female, age 42, unknown 180.0
2497 Male, age 66, unknown 156.4
2396 Male, age 61, right hemisphere 107.9
Centromedial thalamic nucleus
nTPM: 181.5
2279 Female, age 85, left hemisphere 193.2
2401 Male, age 76, right hemisphere 169.7
Habenula
nTPM: 139.4
2203 Male, age 61, left hemisphere 156.4
2252 Male, age 62, unknown 141.9
1957 Male, age 80, both hemispheres 140.9
2276 Male, age 66, unknown 118.3
Lateral geniculate body
nTPM: 192.1
2575 Female, age 94, right hemisphere 225.5
2659 Male, age 66, unknown 216.2
2841 Male, age 80, both hemispheres 204.4
2035 Female, age 72, unknown 187.1
2399 Male, age 61, left hemisphere 185.2
2857 Male, age 74, right hemisphere 177.3
1953 Male, age 62, unknown 174.4
2106 Female, age 67, right hemisphere 167.0
Lateral thalamic nuclei
nTPM: 183.9
2573 Female, age 94, left hemisphere 229.2
2765 Female, age 67, both hemispheres 201.1
2661 Female, age 72, unknown 178.3
2577 Male, age 74, both hemispheres 159.5
1903 Male, age 76, left hemisphere 151.6
Medial dorsal thalamic nucleus
nTPM: 162.7
2660 Female, age 72, unknown 203.1
2572 Female, age 94, right hemisphere 201.6
1859 Male, age 76, both hemispheres 183.6
2492 Male, age 75, right hemisphere 175.7
1810 Male, age 48, unknown 159.9
2283 Male, age 80, right hemisphere 159.6
2576 Male, age 74, both hemispheres 158.1
1930 Female, age 42, unknown 153.1
2026 Male, age 62, unknown 150.4
2039 Female, age 72, unknown 149.2
1971 Male, age 61, right hemisphere 146.0
2402 Female, age 67, both hemispheres 139.7
2498 Male, age 66, unknown 134.7
Medial geniculate body
nTPM: 177.9
2571 Male, age 75, right hemisphere 244.0
2650 Female, age 94, left hemisphere 218.3
2657 Male, age 74, right hemisphere 167.3
2207 Male, age 80, right hemisphere 163.8
2217 Female, age 72, unknown 157.9
1811 Female, age 42, unknown 151.6
2049 Male, age 76, both hemispheres 142.2
Nucleus reuniens
nTPM: 174.0
2210 Female, age 85, left hemisphere 215.0
2205 Male, age 80, left hemisphere 170.2
2212 Female, age 67, left hemisphere 136.9
Nucleus rhomboideus
nTPM: 163.8
2280 Female, age 85, left hemisphere 209.0
2206 Male, age 80, both hemispheres 146.7
2213 Female, age 67, left hemisphere 135.8
Posterior thalamic nucleus
nTPM: 179.4
2649 Female, age 94, both hemispheres 211.0
2266 Male, age 76, right hemisphere 208.1
2655 Male, age 74, right hemisphere 163.7
2495 Female, age 67, right hemisphere 134.9
Pulvinar
nTPM: 171.4
2398 Male, age 61, left hemisphere 199.3
2724 Male, age 74, right hemisphere 183.3
1972 Male, age 62, unknown 180.4
1899 Female, age 42, unknown 172.4
2582 Female, age 72, unknown 172.3
2214 Male, age 76, right hemisphere 170.0
1932 Male, age 80, right hemisphere 167.6
1929 Male, age 48, unknown 167.2
2496 Female, age 67, right hemisphere 151.2
2499 Male, age 66, unknown 150.2
Subthalamic nucleus
nTPM: 203.3
2124 Male, age 62, unknown 262.2
2056 Female, age 72, unknown 233.0
2216 Male, age 48, unknown 202.4
2275 Male, age 66, unknown 202.1
2282 Male, age 61, both hemispheres 201.7
2658 Male, age 74, both hemispheres 191.6
2779 Female, age 42, unknown 176.6
2406 Female, age 72, unknown 156.8
Ventral posterolateral thalamic nucleus
nTPM: 178.8
2570 Male, age 75, right hemisphere 207.6
2740 Male, age 76, right hemisphere 201.2
2581 Female, age 72, unknown 185.5
2397 Male, age 61, right hemisphere 163.7
2578 Male, age 74, both hemispheres 160.0
2197 Male, age 80, both hemispheres 155.0
Ventral posteromedial thalamic nucleus
nTPM: 180.2
2127 Male, age 76, right hemisphere 202.4
2281 Male, age 75, right hemisphere 201.0
2653 Male, age 74, both hemispheres 171.9
2758 Male, age 80, both hemispheres 168.0
2202 Male, age 61, left hemisphere 157.5
Ventral thalamic nuclei
nTPM: 192.0
2858 Female, age 72, unknown 220.3
2580 Male, age 66, unknown 218.0
1860 Male, age 76, both hemispheres 199.1
1845 Male, age 48, unknown 195.6
2652 Male, age 74, left hemisphere 194.7
2291 Female, age 72, unknown 188.9
1912 Female, age 42, unknown 176.4
2285 Male, age 62, unknown 172.5
2204 Male, age 80, both hemispheres 162.0
Zona incerta
nTPM: 187.8
2215 Male, age 66, unknown 237.1
2403 Male, age 62, unknown 198.2
2663 Female, age 72, unknown 191.8
2822 Male, age 74, right hemisphere 167.1
2208 Male, age 80, right hemisphere 145.0

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

384.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 384.0
FF:10154-103A1 76 years, female 384.0

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.1
Pig sample Sample description nTPM
Thalamus
nTPM: 136.1
Samples: 4

Max nTPM: 163.9
Min nTPM: 115.4
Sample A Female 139.6
Sample B Female 125.6
Sample C Male 115.4
Sample D Male 163.9

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.8
Mouse sample Sample description nTPM
Thalamus
nTPM: 97.8
Samples: 4

Max nTPM: 106.2
Min nTPM: 93.9
Sample A Male 106.2
Sample B Male 94.7
Sample C Female 96.3
Sample D Female 93.9

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.8
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 2.8
564753 Antisense, RP_040826_01_C09, Mouse strain C57BL/6J (56 days, male) 2.8

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