We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ITM2B
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ITM2B
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:240.8 nTPM
HPA Brain:436.5 nTPM
GTEx:240.8 nTPM
FANTOM5:828.0 Scaled Tags Per Million
Pig:385.1 nTPM
Mouse:499.4 nTPM
Allen mouse:24.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

436.5
Sample id Sample description nTPM
Amygdala
nTPM: 436.5
2814 Male, age 76, right hemisphere 525.9
2514 Male, age 75, right hemisphere 475.8
2695 Female, age 67, right hemisphere 471.0
1987 Female, age 91, left hemisphere 391.7
2517 Female, age 94, left hemisphere 318.2
Basal amygdala
nTPM: 327.0
1955 Male, age 76, both hemispheres 412.8
2609 Male, age 75, right hemisphere 402.0
2243 Female, age 91, right hemisphere 311.3
2110 Male, age 80, left hemisphere 309.3
2685 Female, age 94, left hemisphere 296.6
2827 Female, age 67, right hemisphere 229.8
Central amygdala
nTPM: 374.4
1905 Male, age 76, both hemispheres 446.3
2826 Female, age 94, left hemisphere 407.2
2515 Male, age 75, right hemisphere 366.5
2239 Male, age 80, left hemisphere 340.2
2701 Female, age 91, right hemisphere 311.9
Corticomedial amygdala
nTPM: 325.3
2240 Male, age 76, both hemispheres 376.7
2428 Male, age 75, right hemisphere 372.2
2829 Male, age 80, left hemisphere 344.3
2242 Female, age 91, right hemisphere 317.9
2429 Female, age 94, left hemisphere 292.2
2535 Female, age 67, right hemisphere 248.9
Lateral amygdala
nTPM: 321.1
1883 Male, age 76, both hemispheres 416.6
2516 Male, age 75, right hemisphere 341.6
2534 Female, age 94, left hemisphere 336.2
2255 Female, age 91, right hemisphere 293.6
2256 Male, age 80, left hemisphere 291.1
2830 Female, age 67, right hemisphere 247.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

240.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 240.8
Samples: 152

Max nTPM: 438.6
Min nTPM: 135.1
Std nTPM: 47.9
Median nTPM: 236.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 438.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 367.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 365.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 355.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 338.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 335.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 334.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 326.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 317.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 315.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 315.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 307.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 305.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 303.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 303.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 303.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 301.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 300.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 290.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 290.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 289.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 286.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 286.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 284.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 282.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 282.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 280.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 279.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 278.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 276.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 273.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 272.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 271.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 270.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 270.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 268.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 267.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 266.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 265.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 265.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 265.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 264.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 264.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 263.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 262.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 262.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 261.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 261.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 259.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 258.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 257.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 256.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 256.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 254.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 253.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 252.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 252.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 252.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 252.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 251.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 250.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 249.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 248.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 248.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 247.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 243.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 242.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 242.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 241.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 241.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 239.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 238.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 238.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 238.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 237.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 236.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 236.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 236.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 236.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 235.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 234.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 234.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 234.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 233.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 231.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 231.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 229.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 229.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 229.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 229.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 229.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 228.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 227.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 226.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 226.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 226.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 225.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 225.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 225.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 224.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 223.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 223.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 223.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 222.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 221.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 220.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 220.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 217.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 214.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 213.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 212.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 211.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 207.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 206.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 206.7
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 206.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 206.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 205.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 203.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 203.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 202.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 199.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 199.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 198.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 197.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 197.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 194.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 194.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 188.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 188.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 187.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 187.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 187.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 186.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 186.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 183.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 182.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 181.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 180.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 178.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 178.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 174.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 170.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 169.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 168.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 167.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 164.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 160.0
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 154.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 149.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 139.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 135.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

828.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 828.0
FF:10151-102I7 76 years, female 828.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

385.1
Pig sample Sample description nTPM
Amygdala
nTPM: 385.2
Samples: 4

Max nTPM: 456.7
Min nTPM: 319.4
Sample A Female 428.6
Sample B Female 456.7
Sample C Male 335.9
Sample D Male 319.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

499.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 499.4
Samples: 4

Max nTPM: 544.3
Min nTPM: 468.0
Sample A Male 474.3
Sample B Male 468.0
Sample C Female 544.3
Sample D Female 510.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

24.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 24.2
532581 Antisense, RP_040810_02_C03, Mouse strain C57BL/6J (56 days, male) 24.2

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org