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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:388.3 nTPM
HPA Brain:627.1 nTPM
GTEx:388.3 nTPM
FANTOM5:1323.2 Scaled Tags Per Million
Pig:1179.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

627.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 627.1
1981 Female, age 72, midline 751.9
2048 Male, age 55, midline 684.7
2565 Male, age 75, midline 640.4
2194 Female, age 79, both hemispheres 542.0
2816 Male, age 47, midline 516.6
Cervical spinal cord, dorsal horn
nTPM: 596.8
2296 Male, age 66, both hemispheres 737.3
2173 Female, age 72, unknown 723.3
2069 Male, age 47, both hemispheres 607.6
1877 Male, age 55, unknown 571.9
2297 Male, age 75, both hemispheres 472.5
2721 Male, age 90, both hemispheres 468.5
Cervical spinal cord, ventral horn
nTPM: 499.7
2809 Male, age 90, both hemispheres 625.6
2098 Female, age 72, unknown 575.2
2068 Male, age 55, unknown 513.3
2295 Male, age 66, both hemispheres 466.6
2480 Male, age 75, both hemispheres 414.8
2820 Female, age 79, both hemispheres 402.7

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

388.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 388.3
Samples: 159

Max nTPM: 545.3
Min nTPM: 231.7
Std nTPM: 68.0
Median nTPM: 383.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 545.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 542.9
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 528.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 517.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 516.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 506.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 505.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 499.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 498.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 495.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 495.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 492.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 491.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 490.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 488.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 484.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 484.3
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 483.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 483.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 478.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 476.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 474.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 472.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 466.5
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 462.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 455.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 455.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 454.2
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 453.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 453.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 448.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 444.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 443.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 442.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 438.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 437.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 437.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 437.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 436.2
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 436.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 435.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 433.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 431.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 430.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 429.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 427.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 426.2
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 425.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 424.3
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 423.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 423.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 422.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 420.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 419.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 417.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 415.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 414.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 413.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 413.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 412.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 411.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 411.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 408.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 405.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 403.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 402.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 399.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 397.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 397.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 395.7
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 395.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 395.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 395.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 391.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 391.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 390.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 386.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 384.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 383.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 383.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 383.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 382.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 379.8
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 379.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 379.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 378.7
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 378.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 377.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 376.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 376.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 376.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 375.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 374.2
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 372.8
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 372.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 370.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 369.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 368.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 368.1
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 367.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 367.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 366.5
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 366.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 365.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 364.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 363.7
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 363.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 362.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 362.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 360.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 358.9
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 356.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 351.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 349.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 347.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 345.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 344.2
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 344.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 343.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 340.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 339.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 333.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 332.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 331.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 331.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 329.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 328.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 326.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 325.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 325.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 316.8
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 314.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 314.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 312.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 311.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 311.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 311.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 308.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 305.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 301.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 298.6
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 291.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 286.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 285.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 285.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 285.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 283.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 282.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 282.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 282.5
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 280.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 278.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 277.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 273.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 268.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 262.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 257.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 257.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 231.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1323.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 1323.2
FF:10181-103D1 60 years, female 1333.0
FF:10159-103A6 76 years, female 1313.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1179.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 1141.8
Samples: 4

Max nTPM: 1290.5
Min nTPM: 885.4
Sample A Female 885.4
Sample B Female 1290.5
Sample C Male 1283.1
Sample D Male 1108.0
Ventral spinal cord
nTPM: 1179.7
Samples: 4

Max nTPM: 1343.7
Min nTPM: 1052.8
Sample A Female 1052.8
Sample B Female 1243.5
Sample C Male 1078.8
Sample D Male 1343.7

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