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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:538.2 nTPM
FANTOM5:1189.6 Scaled Tags Per Million
Pig:944.2 nTPM
Allen mouse:12.4 Expression energy

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

538.2
Sample id Sample description nTPM
Area postrema
nTPM: 535.7
2799 Male, age 61, both hemispheres 570.5
2306 Male, age 80, both hemispheres 521.2
2054 Male, age 76, both hemispheres 515.4
Dorsal medullary reticular nucleus
nTPM: 392.6
2040 Female, age 85, both hemispheres 470.3
2373 Male, age 61, both hemispheres 376.8
2088 Male, age 76, both hemispheres 330.7
Dorsal motor vagal complex
nTPM: 473.3
2813 Female, age 72, unknown 553.0
2000 Male, age 74, unknown 499.2
2643 Male, age 74, both hemispheres 498.4
2797 Male, age 61, both hemispheres 485.5
2185 Male, age 76, both hemispheres 482.6
2844 Male, age 55, unknown 462.5
2807 Female, age 85, both hemispheres 418.0
2133 Female, age 91, both hemispheres 386.9
Gigantocellular reticular nuclei, medullary
nTPM: 395.4
2314 Male, age 61, both hemispheres 476.5
2022 Male, age 76, right hemisphere 407.8
2462 Male, age 74, both hemispheres 406.8
1876 Female, age 85, both hemispheres 402.2
2387 Female, age 91, both hemispheres 341.4
2310 Male, age 80, both hemispheres 338.0
Gigantocellular reticular nuclei, pars
nTPM: 364.6
2336 Male, age 61, both hemispheres 413.1
2084 Female, age 85, both hemispheres 364.4
2168 Male, age 76, both hemispheres 356.2
2330 Male, age 80, both hemispheres 346.3
2706 Male, age 80, both hemispheres 343.1
Inferior olive
nTPM: 529.2
2563 Male, age 74, both hemispheres 691.3
2085 Female, age 85, both hemispheres 557.8
2628 Female, age 91, both hemispheres 519.2
2178 Male, age 61, both hemispheres 484.8
2379 Male, age 80, both hemispheres 392.9
Lateral medullary reticular nucleus
nTPM: 538.2
2305 Male, age 74, both hemispheres 641.3
2044 Male, age 76, both hemispheres 579.0
2804 Female, age 91, both hemispheres 566.5
2190 Female, age 85, both hemispheres 511.4
2852 Male, age 80, both hemispheres 466.6
2374 Male, age 61, both hemispheres 464.4
Medial olivary nucleus
nTPM: 452.5
1943 Male, age 61, both hemispheres 496.9
2851 Male, age 80, both hemispheres 478.7
1962 Male, age 76, both hemispheres 447.9
2138 Female, age 91, both hemispheres 386.5
Medial vestibular nucleus
nTPM: 449.1
2801 Male, age 74, both hemispheres 546.0
2624 Male, age 61, both hemispheres 494.0
2803 Female, age 91, both hemispheres 445.4
2743 Female, age 85, both hemispheres 419.8
2134 Male, age 76, both hemispheres 395.5
2093 Male, age 80, both hemispheres 393.9
Motor hypoglossal nucleus
nTPM: 425.2
2182 Male, age 80, both hemispheres 509.3
2125 Female, age 91, both hemispheres 435.7
2461 Male, age 61, both hemispheres 413.7
2132 Female, age 85, both hemispheres 384.3
2277 Male, age 76, both hemispheres 382.8
Nucleus ambiguus
nTPM: 416.0
2071 Male, age 76, both hemispheres 534.8
2096 Female, age 85, both hemispheres 297.1
Nucleus cuneatus
nTPM: 418.0
2564 Male, age 74, both hemispheres 595.0
2808 Female, age 85, both hemispheres 503.2
2562 Male, age 61, both hemispheres 436.1
2380 Male, age 80, both hemispheres 417.1
2381 Male, age 80, both hemispheres 394.9
2100 Male, age 76, both hemispheres 370.4
2805 Female, age 91, both hemispheres 356.2
2376 Male, age 61, both hemispheres 344.7
2131 Male, age 76, both hemispheres 344.2
Nucleus gracilis
nTPM: 518.4
2627 Male, age 74, both hemispheres 651.0
2382 Male, age 80, both hemispheres 456.8
2299 Female, age 85, both hemispheres 447.4
Nucleus raphe obscurus
nTPM: 485.6
2845 Female, age 85, midline 551.8
2142 Male, age 76, midline 475.7
2800 Male, age 61, midline 429.2
Nucleus raphe pallidus
nTPM: 495.6
1924 Male, age 61, midline 549.4
2145 Male, age 76, midline 476.5
2183 Male, age 80, midline 461.0
Nucleus tractus solitarii
nTPM: 407.1
2191 Female, age 85, both hemispheres 470.1
2144 Female, age 91, right hemisphere 441.1
2656 Male, age 76, both hemispheres 401.7
2307 Male, age 80, both hemispheres 315.5
Parvicellular reticular nuclei
nTPM: 358.4
2119 Male, age 80, both hemispheres 382.8
2095 Male, age 76, both hemispheres 377.5
2558 Male, age 74, both hemispheres 314.8
Parvicellular reticular nuclei, medullary
nTPM: 385.8
2189 Female, age 91, both hemispheres 431.6
2181 Male, age 80, left hemisphere 406.4
2091 Female, age 85, both hemispheres 319.4
Peritrigeminal nucleus
nTPM: 484.5
2067 Female, age 85, both hemispheres 531.6
2179 Male, age 61, both hemispheres 470.1
2136 Male, age 76, both hemispheres 452.0
Prepositus hypoglossal nucleus
nTPM: 456.9
2855 Female, age 85, right hemisphere 501.4
2086 Male, age 80, both hemispheres 412.5
Spinal trigeminal nucleus, caudal
nTPM: 451.8
2642 Male, age 74, both hemispheres 505.6
2312 Male, age 61, both hemispheres 494.8
2390 Female, age 91, both hemispheres 442.0
2308 Male, age 80, both hemispheres 438.8
2447 Male, age 76, both hemispheres 377.9
Spinal trigeminal nucleus, interpolar
nTPM: 417.5
2625 Male, age 61, both hemispheres 478.4
2033 Male, age 80, both hemispheres 466.4
2386 Female, age 85, both hemispheres 434.2
2389 Female, age 91, both hemispheres 403.6
2066 Male, age 76, right hemisphere 304.9
Spinal vestibular nucleus
nTPM: 415.2
2806 Female, age 85, both hemispheres 461.7
2186 Female, age 91, both hemispheres 430.7
2780 Male, age 80, both hemispheres 428.0
2748 Male, age 76, both hemispheres 418.7
2796 Male, age 61, both hemispheres 415.2
2384 Male, age 74, both hemispheres 337.0
Superior vestibular nucleus
nTPM: 480.6
2383 Male, age 74, both hemispheres 596.7
2015 Male, age 80, both hemispheres 461.7
2061 Male, age 76, both hemispheres 383.3
Ventral medullary reticular nucleus
nTPM: 363.9
2372 Male, age 61, both hemispheres 375.5
2060 Male, age 76, both hemispheres 352.4
Ventrolateral medulla, A1-C1 cell groups
nTPM: 458.6
2302 Female, age 91, both hemispheres 493.4
2741 Female, age 85, both hemispheres 481.3
1986 Male, age 76, both hemispheres 467.7
2180 Male, age 61, both hemispheres 465.6
2118 Male, age 80, both hemispheres 384.9

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1189.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 1189.6
FF:10174-103C3 60 years, female 1268.0
FF:10038-101F2 18-64 years, mixed 1201.7
FF:10155-103A2 76 years, female 1099.1

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

944.2
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 944.2
Samples: 4

Max nTPM: 1291.2
Min nTPM: 693.5
Sample A Female 928.0
Sample B Female 693.5
Sample C Male 863.9
Sample D Male 1291.2

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

12.4
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 12.4
532581 Antisense, RP_040810_02_C03, Mouse strain C57BL/6J (56 days, male) 12.4

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