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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:68.8 nTPM
HPA Brain:146.9 nTPM
GTEx:68.8 nTPM
FANTOM5:119.4 Scaled Tags Per Million
Pig:72.4 nTPM
Mouse:91.1 nTPM
Allen mouse:8.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

146.9
Sample id Sample description nTPM
Amygdala
nTPM: 146.9
2814 Male, age 76, right hemisphere 216.4
2695 Female, age 67, right hemisphere 155.6
2514 Male, age 75, right hemisphere 148.7
2517 Female, age 94, left hemisphere 120.9
1987 Female, age 91, left hemisphere 92.9
Basal amygdala
nTPM: 89.9
2110 Male, age 80, left hemisphere 114.8
2685 Female, age 94, left hemisphere 104.7
1955 Male, age 76, both hemispheres 97.3
2827 Female, age 67, right hemisphere 88.5
2609 Male, age 75, right hemisphere 88.0
2243 Female, age 91, right hemisphere 46.0
Central amygdala
nTPM: 97.5
1905 Male, age 76, both hemispheres 144.0
2239 Male, age 80, left hemisphere 105.7
2701 Female, age 91, right hemisphere 102.0
2515 Male, age 75, right hemisphere 80.1
2826 Female, age 94, left hemisphere 55.6
Corticomedial amygdala
nTPM: 71.5
2429 Female, age 94, left hemisphere 112.9
2428 Male, age 75, right hemisphere 93.6
2240 Male, age 76, both hemispheres 78.8
2535 Female, age 67, right hemisphere 65.2
2829 Male, age 80, left hemisphere 52.3
2242 Female, age 91, right hemisphere 26.3
Lateral amygdala
nTPM: 119.8
1883 Male, age 76, both hemispheres 154.9
2516 Male, age 75, right hemisphere 132.6
2256 Male, age 80, left hemisphere 124.4
2830 Female, age 67, right hemisphere 118.4
2534 Female, age 94, left hemisphere 99.4
2255 Female, age 91, right hemisphere 88.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 68.8
Samples: 152

Max nTPM: 344.7
Min nTPM: 12.0
Std nTPM: 47.2
Median nTPM: 58.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 344.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 260.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 234.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 199.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 192.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 172.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 159.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 141.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 141.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 136.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 136.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 135.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 133.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 131.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 128.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 126.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 124.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 117.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 114.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 112.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 105.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 103.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 102.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 102.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 101.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 100.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 96.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 95.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 94.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 93.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 93.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 93.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 89.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 89.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 87.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 83.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 83.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 81.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 80.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 79.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 79.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 78.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 78.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 77.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 76.2
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 75.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 74.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 74.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 73.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 73.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 72.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 72.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 71.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 70.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 69.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 68.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 68.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 67.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 67.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 67.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 66.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 66.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 65.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 64.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 64.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 64.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 63.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 62.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 62.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 61.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 61.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 59.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 58.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 58.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 58.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 58.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 57.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 57.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 57.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 57.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 56.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 56.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 55.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 55.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 54.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 54.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 53.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 53.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 52.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 52.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 51.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 50.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 49.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 49.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 49.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 48.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 47.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 47.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 46.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 46.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 46.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 45.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 44.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 44.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 43.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 41.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 41.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 40.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 40.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 39.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 39.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 39.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 39.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 38.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 37.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 37.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 37.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 37.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 37.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 36.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 36.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 36.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 34.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 33.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 33.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 32.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 31.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 31.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 30.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 30.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 30.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 29.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 29.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 29.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 28.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 28.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 26.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 26.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 25.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 24.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 24.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 23.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 22.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 20.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 18.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 17.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 17.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 17.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 13.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 13.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 12.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 12.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

119.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 119.4
FF:10151-102I7 76 years, female 119.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

72.4
Pig sample Sample description nTPM
Amygdala
nTPM: 72.4
Samples: 4

Max nTPM: 109.5
Min nTPM: 42.9
Sample A Female 65.7
Sample B Female 109.5
Sample C Male 71.6
Sample D Male 42.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 91.2
Samples: 4

Max nTPM: 125.6
Min nTPM: 77.8
Sample A Male 77.8
Sample B Male 78.5
Sample C Female 125.6
Sample D Female 82.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

8.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 8.7
70613967 Antisense, RP_050725_01_C07, Mouse strain C57BL/6J (56 days, male) 9.4
77413700 Antisense, RP_070205_01_E04, Mouse strain C57BL/6J (56 days, male) 8.4
532631 Antisense, RP_040810_02_G06, Mouse strain C57BL/6J (56 days, male) 8.3

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