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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:318.7 nTPM
HPA Brain:248.1 nTPM
GTEx:318.7 nTPM
FANTOM5:400.8 Scaled Tags Per Million
Pig:393.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 186.1
1981 Female, age 72, midline 283.4
2816 Male, age 47, midline 190.8
2194 Female, age 79, both hemispheres 183.0
2048 Male, age 55, midline 149.2
2565 Male, age 75, midline 123.9
Cervical spinal cord, dorsal horn
nTPM: 248.1
2296 Male, age 66, both hemispheres 468.4
2173 Female, age 72, unknown 375.6
2069 Male, age 47, both hemispheres 259.6
1877 Male, age 55, unknown 137.1
2297 Male, age 75, both hemispheres 134.2
2721 Male, age 90, both hemispheres 114.0
Cervical spinal cord, ventral horn
nTPM: 200.9
2098 Female, age 72, unknown 275.7
2480 Male, age 75, both hemispheres 197.8
2820 Female, age 79, both hemispheres 195.4
2068 Male, age 55, unknown 189.9
2295 Male, age 66, both hemispheres 178.8
2809 Male, age 90, both hemispheres 167.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

318.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 318.7
Samples: 159

Max nTPM: 753.6
Min nTPM: 47.6
Std nTPM: 124.1
Median nTPM: 297.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 753.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 600.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 586.1
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 585.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 583.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 580.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 575.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 557.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 529.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 529.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 525.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 522.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 517.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 500.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 494.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 490.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 488.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 487.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 483.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 474.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 466.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 461.4
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 454.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 448.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 446.3
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 444.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 440.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 436.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 435.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 432.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 431.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 427.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 415.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 411.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 408.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 407.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 404.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 402.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 394.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 389.9
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 386.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 383.8
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 382.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 379.6
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 379.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 377.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 376.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 375.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 375.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 373.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 368.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 366.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 365.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 360.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 360.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 358.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 356.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 355.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 354.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 349.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 349.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 347.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 337.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 337.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 329.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 327.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 326.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 322.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 321.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 317.8
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 315.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 313.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 307.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 306.6
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 306.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 304.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 303.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 298.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 298.5
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 297.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 297.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 297.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 294.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 294.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 293.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 292.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 290.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 289.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 286.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 286.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 284.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 282.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 282.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 282.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 282.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 281.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 281.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 280.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 278.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 275.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 275.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 274.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 272.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 267.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 267.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 265.9
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 265.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 265.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 261.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 260.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 258.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 255.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 253.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 251.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 250.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 247.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 245.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 242.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 238.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 237.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 236.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 234.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 233.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 233.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 228.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 226.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 224.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 222.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 219.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 212.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 211.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 208.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 204.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 201.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 187.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 187.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 183.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 181.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 178.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 175.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 162.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 162.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 152.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 152.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 152.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 150.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 145.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 141.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 141.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 134.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 131.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 130.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 124.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 114.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 113.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 95.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 89.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 79.6
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 47.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

400.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 400.8
FF:10181-103D1 60 years, female 499.8
FF:10159-103A6 76 years, female 301.7

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

393.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 345.0
Samples: 4

Max nTPM: 377.1
Min nTPM: 307.3
Sample A Female 348.4
Sample B Female 347.0
Sample C Male 307.3
Sample D Male 377.1
Ventral spinal cord
nTPM: 393.2
Samples: 4

Max nTPM: 478.4
Min nTPM: 332.2
Sample A Female 404.5
Sample B Female 357.5
Sample C Male 332.2
Sample D Male 478.4

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