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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:379.2 nTPM
HPA Brain:339.0 nTPM
GTEx:379.2 nTPM
FANTOM5:222.5 Scaled Tags Per Million
Pig:191.2 nTPM
Mouse:229.4 nTPM
Allen mouse:29.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

339.0
Sample id Sample description nTPM
Amygdala
nTPM: 339.0
2514 Male, age 75, right hemisphere 419.0
1987 Female, age 91, left hemisphere 380.4
2695 Female, age 67, right hemisphere 302.0
2814 Male, age 76, right hemisphere 301.4
2517 Female, age 94, left hemisphere 292.3
Basal amygdala
nTPM: 251.7
2609 Male, age 75, right hemisphere 433.3
2110 Male, age 80, left hemisphere 260.7
1955 Male, age 76, both hemispheres 246.6
2243 Female, age 91, right hemisphere 246.1
2685 Female, age 94, left hemisphere 214.3
2827 Female, age 67, right hemisphere 109.2
Central amygdala
nTPM: 294.4
2515 Male, age 75, right hemisphere 370.3
2239 Male, age 80, left hemisphere 331.4
1905 Male, age 76, both hemispheres 303.7
2701 Female, age 91, right hemisphere 277.7
2826 Female, age 94, left hemisphere 188.9
Corticomedial amygdala
nTPM: 288.1
2428 Male, age 75, right hemisphere 446.9
2429 Female, age 94, left hemisphere 307.8
2242 Female, age 91, right hemisphere 298.7
2829 Male, age 80, left hemisphere 269.2
2240 Male, age 76, both hemispheres 241.8
2535 Female, age 67, right hemisphere 164.3
Lateral amygdala
nTPM: 244.5
2516 Male, age 75, right hemisphere 331.7
2256 Male, age 80, left hemisphere 298.8
1883 Male, age 76, both hemispheres 270.0
2255 Female, age 91, right hemisphere 254.7
2534 Female, age 94, left hemisphere 201.0
2830 Female, age 67, right hemisphere 110.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

379.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 379.2
Samples: 152

Max nTPM: 1430.0
Min nTPM: 63.5
Std nTPM: 224.0
Median nTPM: 354.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1430.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1380.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 1011.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1007.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 956.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 943.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 866.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 799.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 798.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 743.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 741.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 706.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 662.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 625.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 602.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 602.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 583.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 575.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 565.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 561.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 551.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 539.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 535.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 530.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 525.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 521.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 513.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 513.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 507.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 505.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 499.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 499.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 489.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 488.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 487.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 477.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 475.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 468.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 466.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 464.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 456.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 449.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 448.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 448.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 445.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 439.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 438.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 437.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 435.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 434.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 428.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 427.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 426.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 422.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 417.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 405.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 403.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 397.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 395.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 388.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 386.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 378.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 376.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 376.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 375.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 373.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 372.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 372.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 371.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 370.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 367.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 366.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 366.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 364.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 364.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 357.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 351.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 350.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 345.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 340.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 330.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 328.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 318.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 317.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 316.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 305.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 305.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 299.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 298.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 292.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 291.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 290.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 288.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 286.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 285.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 281.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 274.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 272.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 272.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 272.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 271.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 270.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 268.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 267.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 267.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 266.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 265.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 262.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 259.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 253.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 252.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 250.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 249.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 246.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 240.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 238.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 238.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 235.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 233.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 230.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 226.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 225.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 225.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 224.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 224.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 218.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 209.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 189.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 186.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 166.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 161.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 144.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 140.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 135.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 133.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 132.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 130.3
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 126.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 125.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 118.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 117.3
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 108.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 108.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 108.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 105.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 105.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 86.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 82.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 74.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 74.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 65.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 63.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

222.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 222.5
FF:10151-102I7 76 years, female 222.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

191.2
Pig sample Sample description nTPM
Amygdala
nTPM: 191.2
Samples: 4

Max nTPM: 262.0
Min nTPM: 151.2
Sample A Female 197.6
Sample B Female 151.2
Sample C Male 262.0
Sample D Male 153.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

229.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 229.4
Samples: 4

Max nTPM: 256.9
Min nTPM: 211.5
Sample A Male 211.5
Sample B Male 216.6
Sample C Female 232.7
Sample D Female 256.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

29.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 29.6
69854163 Antisense, RP_050324_04_C01, Mouse strain C57BL/6J (56 days, male) 30.0
74819689 Antisense, RP_060315_02_H05, Mouse strain C57BL/6J (56 days, male) 29.7
69838608 Antisense, RP_050310_02_C05, Mouse strain C57BL/6J (56 days, male) 29.2

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