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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:466.0 nTPM
FANTOM5:407.1 Scaled Tags Per Million
Pig:203.3 nTPM
Allen mouse:20.4 Expression energy

PONS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

466.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 339.7
2301 Female, age 85, both hemispheres 463.3
2090 Male, age 80, both hemispheres 320.9
1984 Male, age 76, both hemispheres 312.1
2188 Female, age 91, both hemispheres 262.6
Dorsal cochlear nucleus
nTPM: 321.7
2187 Female, age 91, both hemispheres 439.0
2058 Male, age 76, both hemispheres 381.4
2802 Male, age 74, right hemisphere 296.5
2370 Male, age 61, both hemispheres 292.6
2378 Male, age 80, both hemispheres 198.8
Dorsal tegmental nucleus
nTPM: 466.0
2358 Male, age 61, both hemispheres 618.0
2083 Male, age 80, both hemispheres 491.2
1936 Male, age 76, left hemisphere 379.9
2326 Male, age 74, both hemispheres 374.9
Dorsolateral tegmental area
nTPM: 422.6
2751 Female, age 85, both hemispheres 559.4
2337 Male, age 61, both hemispheres 462.0
2654 Male, age 80, both hemispheres 425.8
2141 Male, age 76, both hemispheres 341.8
2360 Male, age 74, both hemispheres 324.2
Kolliker-Fuse nucleus
nTPM: 412.5
2315 Male, age 76, right hemisphere 555.8
2163 Male, age 80, both hemispheres 426.4
2793 Female, age 91, left hemisphere 255.4
Lateral lemniscal nuclei
nTPM: 215.3
2169 Male, age 76, both hemispheres 258.2
2746 Female, age 85, left hemisphere 216.8
2036 Male, age 80, both hemispheres 207.0
2320 Female, age 91, left hemisphere 203.4
2453 Male, age 74, right hemisphere 191.1
Lateral parabrachial nucleus
nTPM: 304.1
2792 Male, age 76, both hemispheres 353.2
2790 Male, age 61, both hemispheres 341.8
2013 Male, age 80, both hemispheres 300.4
2139 Female, age 85, right hemisphere 221.2
Lateral vestibular nucleus
nTPM: 397.0
2311 Male, age 80, both hemispheres 421.7
2184 Male, age 76, both hemispheres 372.3
Locus coeruleus
nTPM: 450.1
2123 Female, age 91, both hemispheres 528.7
2014 Male, age 55, unknown 489.1
2720 Male, age 74, both hemispheres 455.6
1980 Male, age 76, both hemispheres 432.5
2317 Female, age 72, unknown 430.8
2788 Male, age 74, unknown 415.8
2162 Male, age 80, both hemispheres 398.1
Medial parabrachial nucleus
nTPM: 451.3
2170 Female, age 91, both hemispheres 582.0
2463 Female, age 85, right hemisphere 517.9
2156 Male, age 61, both hemispheres 414.5
2786 Male, age 76, both hemispheres 372.2
2854 Male, age 80, both hemispheres 369.8
Medial periolivary nuclei
nTPM: 240.5
2081 Male, age 80, both hemispheres 288.0
2791 Male, age 74, right hemisphere 268.1
2063 Male, age 76, both hemispheres 261.6
2458 Female, age 91, both hemispheres 213.4
2171 Female, age 85, both hemispheres 171.3
Motor facial nucleus
nTPM: 232.8
2062 Male, age 76, both hemispheres 284.9
2795 Female, age 91, both hemispheres 255.3
2365 Male, age 74, right hemisphere 251.1
2126 Male, age 61, both hemispheres 213.7
2697 Female, age 85, both hemispheres 202.5
2327 Male, age 80, both hemispheres 189.4
Motor trigeminal nucleus
nTPM: 289.6
2309 Male, age 76, both hemispheres 344.8
2335 Male, age 61, both hemispheres 321.2
2321 Female, age 91, both hemispheres 293.0
2560 Male, age 74, both hemispheres 245.3
2079 Male, age 80, both hemispheres 244.0
Nuclei of the trapezoid body
nTPM: 220.4
1983 Male, age 76, both hemispheres 297.4
2166 Male, age 80, both hemispheres 269.9
2368 Female, age 91, both hemispheres 222.4
2735 Female, age 85, both hemispheres 184.5
2159 Male, age 61, both hemispheres 127.7
Nucleus raphe magnus
nTPM: 203.0
2051 Male, age 76, both hemispheres 275.0
2455 Male, age 74, both hemispheres 247.7
2328 Male, age 80, both hemispheres 234.1
2459 Female, age 91, both hemispheres 189.9
2172 Female, age 85, both hemispheres 139.1
2160 Male, age 61, both hemispheres 132.1
Paramedian reticular nucleus
nTPM: 310.7
2057 Male, age 80, both hemispheres 413.4
2052 Male, age 76, both hemispheres 303.7
2050 Female, age 85, both hemispheres 280.9
2313 Male, age 61, both hemispheres 244.7
Pedunculopontine tegmental nucleus
nTPM: 429.4
2334 Male, age 80, both hemispheres 489.8
2338 Male, age 61, both hemispheres 450.7
1921 Female, age 85, both hemispheres 347.7
Pontine nuclei
nTPM: 231.9
2454 Male, age 74, left hemisphere 288.8
2109 Female, age 72, unknown 261.7
1863 Male, age 55, unknown 254.7
2115 Male, age 80, left hemisphere 249.2
2319 Female, age 91, both hemispheres 238.8
1968 Male, age 76, left hemisphere 238.6
2787 Female, age 85, both hemispheres 211.5
2727 Male, age 61, right hemisphere 111.9
Pontine raphe nucleus
nTPM: 301.2
2853 Male, age 76, midline 344.8
2122 Female, age 85, midline 257.6
Posteroventral cochlear nucleus
nTPM: 307.5
2070 Male, age 76, both hemispheres 387.9
2341 Male, age 80, both hemispheres 377.9
2371 Male, age 61, both hemispheres 286.8
2752 Female, age 85, both hemispheres 258.3
2135 Female, age 91, both hemispheres 226.4
Principal sensory trigeminal nucleus
nTPM: 261.1
2324 Male, age 76, both hemispheres 418.6
2367 Female, age 91, left hemisphere 239.5
2008 Male, age 80, left hemisphere 237.5
2158 Male, age 61, both hemispheres 148.6
Reticular pontine nucleus, caudal
nTPM: 260.5
2559 Male, age 74, both hemispheres 329.3
2092 Male, age 76, both hemispheres 306.8
2457 Female, age 91, both hemispheres 221.4
2332 Male, age 80, right hemisphere 184.5
Reticular pontine nucleus, oral
nTPM: 331.5
1939 Male, age 80, both hemispheres 485.7
2167 Male, age 76, both hemispheres 378.9
2012 Female, age 85, both hemispheres 322.7
2361 Male, age 74, both hemispheres 301.3
2366 Female, age 91, both hemispheres 168.6
Reticulotegmental nucleus
nTPM: 318.4
2322 Female, age 91, both hemispheres 368.1
2333 Male, age 80, both hemispheres 316.6
2325 Male, age 76, both hemispheres 301.0
2452 Male, age 74, both hemispheres 287.8
Spinal trigeminal nucleus, oral
nTPM: 318.3
2164 Male, age 80, both hemispheres 344.9
1978 Male, age 76, both hemispheres 308.5
2737 Female, age 85, both hemispheres 301.5
Subcoeruleus area
nTPM: 396.6
2369 Female, age 85, left hemisphere 554.2
2323 Female, age 91, left hemisphere 446.7
1958 Male, age 80, both hemispheres 373.1
2451 Male, age 74, both hemispheres 334.6
2089 Male, age 76, left hemisphere 274.4
Superior olive
nTPM: 232.6
2364 Male, age 74, right hemisphere 289.2
2329 Male, age 80, right hemisphere 249.6
2020 Male, age 76, both hemispheres 244.5
2561 Female, age 91, both hemispheres 193.0
1875 Female, age 85, both hemispheres 186.6
Ventral periolivary nuclei
nTPM: 204.9
2165 Male, age 80, both hemispheres 235.8
2023 Male, age 76, both hemispheres 220.4
2130 Female, age 85, both hemispheres 192.6
2794 Female, age 91, left hemisphere 170.6
Ventrolateral tegmental area, A5 NE cell group
nTPM: 293.2
2359 Male, age 61, both hemispheres 501.0
2840 Female, age 85, both hemispheres 298.9
2161 Male, age 80, both hemispheres 252.8
1959 Male, age 76, both hemispheres 246.5
2456 Female, age 91, both hemispheres 230.4
2449 Male, age 74, both hemispheres 229.4

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

407.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 407.1
FF:10182-103D2 60 years, female 444.1
FF:10165-103B3 76 years, female 370.1
Pons
Scaled Tags Per Million: 256.1
FF:10033-101E6 18-54 years, mixed 256.1

PONS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

203.3
Pig sample Sample description nTPM
Pons
nTPM: 203.3
Samples: 4

Max nTPM: 335.7
Min nTPM: 141.7
Sample A Female 141.7
Sample B Female 171.0
Sample C Male 335.7
Sample D Male 164.7

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

20.4
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 20.4
74819689 Antisense, RP_060315_02_H05, Mouse strain C57BL/6J (56 days, male) 23.8
69854163 Antisense, RP_050324_04_C01, Mouse strain C57BL/6J (56 days, male) 19.2
69838608 Antisense, RP_050310_02_C05, Mouse strain C57BL/6J (56 days, male) 18.3

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