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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:564.0 nTPM
FANTOM5:1101.4 Scaled Tags Per Million

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

564.0
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 470.4
2396 Male, age 61, right hemisphere 650.5
2497 Male, age 66, unknown 411.9
2032 Female, age 42, unknown 348.6
Centromedial thalamic nucleus
nTPM: 438.7
2279 Female, age 85, left hemisphere 473.7
2401 Male, age 76, right hemisphere 403.8
Habenula
nTPM: 379.1
1957 Male, age 80, both hemispheres 473.6
2203 Male, age 61, left hemisphere 383.0
2252 Male, age 62, unknown 346.5
2276 Male, age 66, unknown 313.4
Lateral geniculate body
nTPM: 465.0
2857 Male, age 74, right hemisphere 571.2
2659 Male, age 66, unknown 523.3
2575 Female, age 94, right hemisphere 521.4
2841 Male, age 80, both hemispheres 467.1
1953 Male, age 62, unknown 462.3
2399 Male, age 61, left hemisphere 430.1
2035 Female, age 72, unknown 412.6
2106 Female, age 67, right hemisphere 332.4
Lateral thalamic nuclei
nTPM: 466.2
2661 Female, age 72, unknown 509.4
2573 Female, age 94, left hemisphere 495.6
2577 Male, age 74, both hemispheres 491.2
2765 Female, age 67, both hemispheres 460.2
1903 Male, age 76, left hemisphere 374.8
Medial dorsal thalamic nucleus
nTPM: 427.7
2572 Female, age 94, right hemisphere 627.1
2660 Female, age 72, unknown 463.1
2039 Female, age 72, unknown 443.1
1930 Female, age 42, unknown 434.1
1810 Male, age 48, unknown 432.9
1859 Male, age 76, both hemispheres 428.2
2498 Male, age 66, unknown 420.0
2026 Male, age 62, unknown 410.5
1971 Male, age 61, right hemisphere 406.4
2576 Male, age 74, both hemispheres 400.3
2402 Female, age 67, both hemispheres 387.9
2283 Male, age 80, right hemisphere 353.6
2492 Male, age 75, right hemisphere 352.6
Medial geniculate body
nTPM: 458.5
2650 Female, age 94, left hemisphere 510.5
2571 Male, age 75, right hemisphere 495.5
2049 Male, age 76, both hemispheres 494.1
2207 Male, age 80, right hemisphere 463.2
1811 Female, age 42, unknown 448.9
2657 Male, age 74, right hemisphere 424.4
2217 Female, age 72, unknown 373.2
Nucleus reuniens
nTPM: 518.4
2210 Female, age 85, left hemisphere 539.9
2212 Female, age 67, left hemisphere 522.9
2205 Male, age 80, left hemisphere 492.3
Nucleus rhomboideus
nTPM: 470.0
2213 Female, age 67, left hemisphere 514.4
2280 Female, age 85, left hemisphere 491.0
2206 Male, age 80, both hemispheres 404.6
Posterior thalamic nucleus
nTPM: 564.0
2649 Female, age 94, both hemispheres 1005.6
2655 Male, age 74, right hemisphere 455.8
2495 Female, age 67, right hemisphere 422.5
2266 Male, age 76, right hemisphere 372.2
Pulvinar
nTPM: 420.1
2724 Male, age 74, right hemisphere 580.3
2214 Male, age 76, right hemisphere 439.3
2496 Female, age 67, right hemisphere 434.9
1929 Male, age 48, unknown 426.4
2499 Male, age 66, unknown 425.8
2398 Male, age 61, left hemisphere 420.6
2582 Female, age 72, unknown 408.0
1932 Male, age 80, right hemisphere 394.3
1972 Male, age 62, unknown 380.7
1899 Female, age 42, unknown 290.6
Subthalamic nucleus
nTPM: 449.8
2658 Male, age 74, both hemispheres 560.4
2124 Male, age 62, unknown 556.3
2275 Male, age 66, unknown 436.5
2282 Male, age 61, both hemispheres 435.5
2779 Female, age 42, unknown 434.0
2216 Male, age 48, unknown 427.7
2056 Female, age 72, unknown 404.9
2406 Female, age 72, unknown 342.9
Ventral posterolateral thalamic nucleus
nTPM: 418.8
2578 Male, age 74, both hemispheres 508.5
2397 Male, age 61, right hemisphere 502.8
2570 Male, age 75, right hemisphere 405.9
2197 Male, age 80, both hemispheres 405.5
2740 Male, age 76, right hemisphere 350.3
2581 Female, age 72, unknown 339.9
Ventral posteromedial thalamic nucleus
nTPM: 402.5
2653 Male, age 74, both hemispheres 487.0
2127 Male, age 76, right hemisphere 408.9
2202 Male, age 61, left hemisphere 400.7
2281 Male, age 75, right hemisphere 369.5
2758 Male, age 80, both hemispheres 346.6
Ventral thalamic nuclei
nTPM: 449.6
2580 Male, age 66, unknown 558.9
2291 Female, age 72, unknown 468.5
2204 Male, age 80, both hemispheres 464.8
1860 Male, age 76, both hemispheres 458.3
1845 Male, age 48, unknown 442.4
2652 Male, age 74, left hemisphere 441.3
2285 Male, age 62, unknown 418.8
1912 Female, age 42, unknown 410.6
2858 Female, age 72, unknown 382.8
Zona incerta
nTPM: 473.5
2822 Male, age 74, right hemisphere 591.7
2403 Male, age 62, unknown 470.8
2215 Male, age 66, unknown 463.6
2663 Female, age 72, unknown 438.9
2208 Male, age 80, right hemisphere 402.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1101.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 1101.4
FF:10154-103A1 76 years, female 1101.4

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