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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:57.7 nTPM
HPA Brain:160.5 nTPM
GTEx:57.7 nTPM
FANTOM5:185.1 Scaled Tags Per Million
Pig:55.2 nTPM
Mouse:128.7 nTPM
Allen mouse:16.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.5
Sample id Sample description nTPM
Amygdala
nTPM: 114.3
2814 Male, age 76, right hemisphere 138.3
2517 Female, age 94, left hemisphere 122.1
1987 Female, age 91, left hemisphere 115.8
2514 Male, age 75, right hemisphere 102.1
2695 Female, age 67, right hemisphere 93.2
Basal amygdala
nTPM: 160.5
2685 Female, age 94, left hemisphere 196.6
2243 Female, age 91, right hemisphere 177.1
2110 Male, age 80, left hemisphere 165.7
2827 Female, age 67, right hemisphere 163.7
1955 Male, age 76, both hemispheres 138.6
2609 Male, age 75, right hemisphere 121.4
Central amygdala
nTPM: 146.0
2826 Female, age 94, left hemisphere 179.6
2239 Male, age 80, left hemisphere 163.9
2701 Female, age 91, right hemisphere 135.3
1905 Male, age 76, both hemispheres 129.0
2515 Male, age 75, right hemisphere 122.3
Corticomedial amygdala
nTPM: 144.0
2535 Female, age 67, right hemisphere 176.8
2429 Female, age 94, left hemisphere 158.8
2829 Male, age 80, left hemisphere 157.1
2242 Female, age 91, right hemisphere 154.9
2240 Male, age 76, both hemispheres 108.8
2428 Male, age 75, right hemisphere 107.7
Lateral amygdala
nTPM: 155.2
2534 Female, age 94, left hemisphere 221.9
2255 Female, age 91, right hemisphere 160.0
2256 Male, age 80, left hemisphere 159.9
1883 Male, age 76, both hemispheres 146.5
2830 Female, age 67, right hemisphere 137.2
2516 Male, age 75, right hemisphere 106.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 57.7
Samples: 152

Max nTPM: 118.6
Min nTPM: 24.1
Std nTPM: 16.2
Median nTPM: 56.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 118.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 109.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 101.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 94.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 92.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 88.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 87.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 84.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 83.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 82.4
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 82.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 80.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 80.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 80.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 80.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 79.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 78.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 78.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 78.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 76.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 76.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 74.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 74.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 74.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 73.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 72.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 72.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 71.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 69.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 69.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 69.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 68.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 68.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 67.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 67.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 67.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 67.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 66.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 66.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 65.5
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 65.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 65.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 65.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 64.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 64.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 64.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 63.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 63.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 63.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 62.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 62.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 62.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 62.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 62.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 62.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 61.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 61.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 60.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 60.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 60.2
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 60.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 60.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 59.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 59.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 59.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 58.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 58.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 58.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 58.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 57.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 57.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 57.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 57.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 56.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 56.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 56.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 55.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 54.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 54.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 54.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 54.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 54.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 54.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 53.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 53.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 53.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 53.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 53.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 53.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 52.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 52.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 52.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 52.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 52.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 51.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 51.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 51.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 51.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 51.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 50.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 50.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 50.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 50.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 50.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 50.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 49.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 49.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 48.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 48.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 48.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 48.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 48.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 48.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 47.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 47.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 46.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 46.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 46.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 46.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 45.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 45.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 45.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 45.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 44.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 44.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 43.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 43.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 43.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 42.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 42.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 40.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 40.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 39.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 39.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 39.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 39.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 38.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 37.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 37.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 37.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 37.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 35.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 33.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 33.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 32.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 31.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 29.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 28.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 27.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 27.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 26.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 24.1
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

185.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 185.1
FF:10151-102I7 76 years, female 185.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.2
Pig sample Sample description nTPM
Amygdala
nTPM: 55.2
Samples: 4

Max nTPM: 72.6
Min nTPM: 41.5
Sample A Female 72.6
Sample B Female 41.5
Sample C Male 52.4
Sample D Male 54.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 128.7
Samples: 4

Max nTPM: 133.9
Min nTPM: 121.6
Sample A Male 133.9
Sample B Male 121.6
Sample C Female 132.9
Sample D Female 126.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.7
69752065 Antisense, RP_050505_01_A07, Mouse strain C57BL/6J (56 days, male) 16.7

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