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  • GABARAPL1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:171.0 nTPM
HPA Brain:226.3 nTPM
GTEx:171.0 nTPM
FANTOM5:241.3 Scaled Tags Per Million
Pig:230.4 nTPM
Mouse:665.1 nTPM
Allen mouse:27.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.3
Sample id Sample description nTPM
Amygdala
nTPM: 202.1
2814 Male, age 76, right hemisphere 282.5
1987 Female, age 91, left hemisphere 212.5
2517 Female, age 94, left hemisphere 177.6
2695 Female, age 67, right hemisphere 169.7
2514 Male, age 75, right hemisphere 168.2
Basal amygdala
nTPM: 214.0
2243 Female, age 91, right hemisphere 277.1
2110 Male, age 80, left hemisphere 250.5
2685 Female, age 94, left hemisphere 216.5
1955 Male, age 76, both hemispheres 208.2
2609 Male, age 75, right hemisphere 181.7
2827 Female, age 67, right hemisphere 150.1
Central amygdala
nTPM: 226.3
1905 Male, age 76, both hemispheres 262.7
2826 Female, age 94, left hemisphere 246.5
2701 Female, age 91, right hemisphere 228.0
2239 Male, age 80, left hemisphere 216.5
2515 Male, age 75, right hemisphere 177.7
Corticomedial amygdala
nTPM: 205.3
2829 Male, age 80, left hemisphere 277.0
2242 Female, age 91, right hemisphere 269.2
2240 Male, age 76, both hemispheres 184.4
2535 Female, age 67, right hemisphere 181.5
2429 Female, age 94, left hemisphere 171.7
2428 Male, age 75, right hemisphere 148.2
Lateral amygdala
nTPM: 208.6
1883 Male, age 76, both hemispheres 281.4
2534 Female, age 94, left hemisphere 246.6
2255 Female, age 91, right hemisphere 224.3
2256 Male, age 80, left hemisphere 168.8
2516 Male, age 75, right hemisphere 168.4
2830 Female, age 67, right hemisphere 162.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 171.0
Samples: 152

Max nTPM: 500.7
Min nTPM: 57.5
Std nTPM: 84.3
Median nTPM: 139.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 500.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 454.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 421.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 393.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 376.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 357.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 337.7
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 335.9
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 331.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 330.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 317.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 312.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 310.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 310.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 289.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 289.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 281.5
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 277.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 273.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 273.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 271.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 264.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 262.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 258.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 251.6
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 249.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 248.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 242.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 241.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 235.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 234.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 233.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 230.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 229.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 223.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 218.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 217.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 215.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 214.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 212.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 212.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 211.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 208.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 207.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 205.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 205.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 204.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 194.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 192.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 191.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 191.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 184.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 183.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 180.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 176.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 175.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 169.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 169.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 169.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 168.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 168.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 166.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 165.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 164.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 159.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 159.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 152.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 151.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 149.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 147.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 146.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 145.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 142.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 141.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 141.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 140.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 139.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 139.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 139.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 137.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 137.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 137.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 136.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 136.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 135.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 132.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 131.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 131.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 130.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 130.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 129.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 127.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 126.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 123.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 123.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 122.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 122.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 122.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 122.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 121.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 120.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 119.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 118.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 116.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 116.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 114.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 114.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 113.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 113.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 112.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 112.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 112.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 111.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 110.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 108.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 108.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 107.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 104.3
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 104.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 103.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 102.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 99.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 99.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 99.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 96.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 96.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 96.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 95.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 95.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 94.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 94.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 94.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 92.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 92.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 92.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 92.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 91.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 90.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 88.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 87.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 85.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 85.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 84.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 84.3
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 84.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 82.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 78.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 75.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 75.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 75.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 74.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 57.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

241.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 241.3
FF:10151-102I7 76 years, female 241.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

230.4
Pig sample Sample description nTPM
Amygdala
nTPM: 230.4
Samples: 4

Max nTPM: 339.0
Min nTPM: 178.8
Sample A Female 339.0
Sample B Female 220.8
Sample C Male 178.8
Sample D Male 182.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

665.1
Mouse sample Sample description nTPM
Amygdala
nTPM: 665.1
Samples: 4

Max nTPM: 711.4
Min nTPM: 621.3
Sample A Male 711.4
Sample B Male 688.6
Sample C Female 621.3
Sample D Female 639.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

27.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 27.3
71608204 Antisense, RP_050927_01_A12, Mouse strain C57BL/6J (56 days, male) 31.5
654925 Antisense, RP_040922_01_A11, Mouse strain C57BL/6J (56 days, male) 23.2

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