MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:163.6 nTPM
HPA Brain:259.3 nTPM
GTEx:163.6 nTPM
FANTOM5:127.1 Scaled Tags Per Million
Pig:499.7 nTPM
Mouse:648.1 nTPM
Allen mouse:21.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 259.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 208.5
2666 Male, age 74, left hemisphere 263.4
1827 Male, age 72, unknown 238.4
2019 Male, age 18, unknown 228.8
2586 Male, age 75, left hemisphere 228.5
2411 Female, age 72, unknown 210.2
2828 Female, age 72, unknown 196.1
2219 Male, age 76, both hemispheres 191.8
1833 Male, age 53, unknown 184.7
1870 Female, age 42, unknown 183.8
1830 Male, age 51, unknown 159.6
Dorsal raphe nucleus
nTPM: 226.1
2298 Female, age 72, unknown 275.9
1828 Male, age 53, unknown 254.4
2047 Male, age 72, unknown 232.3
2750 Male, age 76, both hemispheres 197.9
2016 Female, age 72, unknown 170.2
Inferior colliculus
nTPM: 203.1
2097 Female, age 72, unknown 219.9
1890 Male, age 53, unknown 214.5
1848 Female, age 42, unknown 198.1
2849 Male, age 72, unknown 179.9
Median raphe nucleus
nTPM: 237.1
2220 Male, age 76, midline 237.1
Periaquaductal grey, anterior
nTPM: 207.6
1947 Male, age 18, unknown 227.1
1795 Male, age 51, unknown 217.8
2502 Female, age 75, unknown 178.1
Periaquaductal grey, dorsal
nTPM: 172.5
1831 Male, age 72, unknown 185.7
1840 Male, age 53, unknown 179.7
2850 Male, age 76, both hemispheres 175.7
2464 Female, age 72, unknown 148.8
Periaquaductal grey, lateral
nTPM: 175.5
2053 Male, age 18, unknown 184.3
2272 Male, age 74, both hemispheres 172.3
2140 Male, age 76, both hemispheres 170.0
Pretectal area
nTPM: 237.4
1817 Female, age 42, unknown 314.2
1944 Female, age 72, unknown 313.7
1816 Male, age 51, unknown 307.7
2007 Male, age 72, unknown 301.8
1815 Male, age 53, unknown 247.1
2667 Female, age 75, unknown 243.7
2224 Female, age 72, unknown 196.0
2825 Male, age 18, unknown 183.4
2407 Male, age 75, both hemispheres 174.1
2273 Male, age 74, both hemispheres 169.5
2316 Male, age 76, right hemisphere 159.7
Red nucleus
nTPM: 181.1
1821 Female, age 72, unknown 227.7
2584 Male, age 75, left hemisphere 209.0
2725 Female, age 75, unknown 202.1
2785 Male, age 18, unknown 199.8
2588 Male, age 74, left hemisphere 194.4
2823 Male, age 76, right hemisphere 175.0
1954 Female, age 42, unknown 174.1
2503 Female, age 72, unknown 171.1
2769 Male, age 72, unknown 159.1
2227 Male, age 72, unknown 157.3
1904 Male, age 53, unknown 153.1
1865 Male, age 51, unknown 150.1
Substantia nigra
nTPM: 259.3
1916 Female, age 42, unknown 366.7
2241 Male, age 72, unknown 307.2
1889 Female, age 72, unknown 295.8
1941 Male, age 53, unknown 287.6
1851 Male, age 51, unknown 280.3
2583 Male, age 75, right hemisphere 224.7
2409 Female, age 72, unknown 214.5
2699 Male, age 18, unknown 211.7
2665 Male, age 74, both hemispheres 205.5
2590 Female, age 75, unknown 199.3
Superior colliculus
nTPM: 202.6
2668 Female, age 75, unknown 246.6
2087 Female, age 72, unknown 240.2
1895 Male, age 76, right hemisphere 230.8
1796 Male, age 53, unknown 218.8
2587 Male, age 74, left hemisphere 212.2
2261 Male, age 18, unknown 210.2
1839 Male, age 51, unknown 197.7
2664 Male, age 75, both hemispheres 181.7
1913 Female, age 42, unknown 147.6
1995 Male, age 72, unknown 139.6
Ventral tegmental area
nTPM: 222.5
1915 Female, age 42, unknown 290.5
2218 Male, age 76, both hemispheres 253.7
2410 Female, age 72, unknown 241.2
1942 Male, age 51, unknown 217.7
2021 Male, age 53, unknown 168.7
2223 Female, age 72, unknown 163.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 163.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 163.6
Samples: 139

Max nTPM: 485.1
Min nTPM: 56.6
Std nTPM: 92.0
Median nTPM: 129.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 485.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 466.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 457.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 433.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 423.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 400.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 395.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 376.4
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 346.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 319.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 311.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 127.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 127.1
FF:10158-103A5 76 years, female 127.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 499.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 391.2
Samples: 4

Max nTPM: 539.6
Min nTPM: 280.8
Sample A Female 539.6
Sample B Female 280.8
Sample C Male 434.4
Sample D Male 309.8
Midbrain
nTPM: 452.7
Samples: 4

Max nTPM: 507.0
Min nTPM: 398.3
Sample A Female 431.1
Sample B Female 398.3
Sample C Male 474.2
Sample D Male 507.0
Periaqueductal gray
nTPM: 343.8
Samples: 3

Max nTPM: 369.3
Min nTPM: 300.8
Sample B Female 361.4
Sample C Male 369.3
Sample D Male 300.8
Superior colliculi
nTPM: 499.8
Samples: 4

Max nTPM: 647.9
Min nTPM: 296.2
Sample A Female 647.9
Sample B Female 296.2
Sample C Male 569.4
Sample D Male 485.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 648.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 648.1
Samples: 4

Max nTPM: 677.1
Min nTPM: 612.5
Sample A Male 641.3
Sample B Male 661.3
Sample C Female 612.5
Sample D Female 677.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 21.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.1
71608204 Antisense, RP_050927_01_A12, Mouse strain C57BL/6J (56 days, male) 23.7
654925 Antisense, RP_040922_01_A11, Mouse strain C57BL/6J (56 days, male) 18.5

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