We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
COL6A2
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • COL6A2
TISSUE PRIMARY DATA OVARY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Ovary
Tissue proteome
Ovary
OVARY - Expression summary
Protein expression
Ovaryi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Follicle cells: Low
Ovarian stroma cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:689.1 nTPM
HPA:371.8 nTPM
GTEx:689.1 nTPM
FANTOM5:539.8 Scaled Tags Per Million

OVARY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA007029Antibody HPA030920Antibody HPA038799
Follicle cells -LowNot detected
Ovarian stroma cells HighMediumHigh







OVARY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

371.8
overview
Female, age 64
Ovary sample 192
nTPM: 323.3
Cell types%
Stromal cells:
70

Smooth muscle cells:
15

Other cell types:
15

overview
Female, age 52
Ovary sample 193
nTPM: 275.8
Cell types%
Stromal cells:
95

Other cell types:
5

overview
Female, age 80
Ovary sample 308
nTPM: 87.1
Cell types%
Stromal cells:
70

Smooth muscle cells:
25

Other cell types:
5

N/A
Female, age 7
Ovary sample 3662
nTPM: 313.3
N/A
Female, age 16
Ovary sample 3663
nTPM: 224.1
N/A
Female, age 20
Ovary sample 3664
nTPM: 406.3
N/A
Female, age 32
Ovary sample 3665
nTPM: 973

OVARY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

689.1
GTEx sample id Sample description nTPM
Ovary
Average nTPM: 689.1
Samples: 180

Max nTPM: 1148.8
Min nTPM: 264.3
Std nTPM: 166.2
Median nTPM: 690.0
GTEX-WXYG-1426-SM-4ONCK 50-59 years, female 1148.8
GTEX-13O3O-2726-SM-5KM35 60-69 years, female 1127.6
GTEX-X8HC-2726-SM-46MUA 50-59 years, female 1106.1
GTEX-S341-0726-SM-4AD5R 40-49 years, female 1097.8
GTEX-ZLWG-0926-SM-4WWC3 50-59 years, female 1080.8
GTEX-1IDJE-1126-SM-A96SO 50-59 years, female 1042.6
GTEX-T5JW-0426-SM-4DM7M 20-29 years, female 1030.3
GTEX-1PBJI-2026-SM-DPRYF 20-29 years, female 1002.1
GTEX-TML8-0926-SM-4DXSJ 40-49 years, female 985.4
GTEX-R55G-1526-SM-48FER 40-49 years, female 969.1
GTEX-15FZZ-0826-SM-6LLJO 30-39 years, female 964.0
GTEX-XUZC-1026-SM-4BOPY 30-39 years, female 960.1
GTEX-1QEPI-2726-SM-DPRZ6 60-69 years, female 958.3
GTEX-12WSJ-1226-SM-5LU91 40-49 years, female 956.8
GTEX-QCQG-1426-SM-48U22 50-59 years, female 947.3
GTEX-15ER7-2326-SM-7KUN3 20-29 years, female 933.2
GTEX-UJHI-1226-SM-4IHLR 50-59 years, female 933.2
GTEX-14PKU-1226-SM-686ZM 40-49 years, female 904.5
GTEX-ZZPU-2126-SM-5EGIU 50-59 years, female 901.3
GTEX-1F5PL-1626-SM-7MXTY 40-49 years, female 898.0
GTEX-1LGOU-1026-SM-DHXL4 20-29 years, female 896.1
GTEX-1R9PN-0626-SM-E6CR9 40-49 years, female 890.9
GTEX-Y114-1726-SM-4TT7U 50-59 years, female 889.8
GTEX-15EOM-1526-SM-68723 20-29 years, female 885.1
GTEX-ZV6S-1426-SM-59HKX 40-49 years, female 855.3
GTEX-1PIEJ-1626-SM-E6CP9 20-29 years, female 853.7
GTEX-11P81-1526-SM-5P9GS 30-39 years, female 849.8
GTEX-WEY5-0626-SM-4LMIA 40-49 years, female 846.9
GTEX-1LVAM-1826-SM-DHXKR 50-59 years, female 843.6
GTEX-X4EO-2426-SM-4QASD 60-69 years, female 839.5
GTEX-ZP4G-0626-SM-4WWF1 20-29 years, female 837.2
GTEX-1C475-0426-SM-7P8OU 40-49 years, female 823.0
GTEX-1CAMS-2126-SM-7MXTF 40-49 years, female 815.2
GTEX-1B933-2126-SM-7MGXR 50-59 years, female 814.2
GTEX-14JG6-0626-SM-68716 30-39 years, female 810.5
GTEX-1H1CY-1926-SM-9WG7X 60-69 years, female 810.5
GTEX-1GN1W-1426-SM-9JGHP 50-59 years, female 809.1
GTEX-1IDJU-1126-SM-A9G2S 60-69 years, female 807.8
GTEX-OHPL-2426-SM-48TDN 60-69 years, female 806.0
GTEX-1IKOE-2326-SM-A8N99 30-39 years, female 805.1
GTEX-QVJO-3126-SM-COH22 60-69 years, female 802.9
GTEX-1ICG6-1526-SM-C1YQT 70-79 years, female 800.7
GTEX-ZVT3-2626-SM-5GU5L 60-69 years, female 798.1
GTEX-XYKS-1726-SM-4E3IO 60-69 years, female 797.2
GTEX-TMMY-1726-SM-4DXTD 40-49 years, female 795.5
GTEX-WI4N-2526-SM-4OOSE 40-49 years, female 788.0
GTEX-1J1OQ-1626-SM-CE6TB 40-49 years, female 788.0
GTEX-RTLS-2326-SM-46MUH 60-69 years, female 787.2
GTEX-PWCY-1326-SM-48TCU 20-29 years, female 782.1
GTEX-1LVAN-2726-SM-CNPQG 50-59 years, female 777.3
GTEX-1KANC-1026-SM-D3LAA 50-59 years, female 772.2
GTEX-1313W-2726-SM-5P9IX 50-59 years, female 769.9
GTEX-14DAQ-2226-SM-5YYAD 60-69 years, female 762.8
GTEX-RWS6-1026-SM-47JXD 60-69 years, female 761.3
GTEX-11I78-1926-SM-59878 50-59 years, female 761.1
GTEX-YFC4-2726-SM-5IFJW 40-49 years, female 757.5
GTEX-1F52S-2226-SM-7MXVE 60-69 years, female 754.7
GTEX-POMQ-1426-SM-3P61D 20-29 years, female 754.0
GTEX-XMD3-2326-SM-4AT5H 50-59 years, female 752.9
GTEX-SN8G-2426-SM-EVR31 50-59 years, female 748.4
GTEX-S4P3-0926-SM-4AD54 50-59 years, female 747.8
GTEX-XUW1-0126-SM-4BOOQ 50-59 years, female 741.3
GTEX-13QIC-1526-SM-5IJFL 60-69 years, female 741.1
GTEX-1EWIQ-2226-SM-7MGXJ 70-79 years, female 741.0
GTEX-WWYW-2726-SM-4MVOP 50-59 years, female 736.3
GTEX-1F88F-2126-SM-9KNUK 60-69 years, female 735.7
GTEX-14PJM-2426-SM-686ZC 50-59 years, female 734.8
GTEX-1QP67-1526-SM-E76P4 40-49 years, female 728.1
GTEX-131XG-1926-SM-5LZVG 50-59 years, female 726.3
GTEX-1I4MK-1526-SM-CE6T1 50-59 years, female 725.3
GTEX-1OJC4-2026-SM-E6CQW 50-59 years, female 724.3
GTEX-PWN1-2426-SM-48TDD 40-49 years, female 722.1
GTEX-13SLX-2426-SM-664OM 50-59 years, female 721.2
GTEX-13OVI-0726-SM-5L3DD 60-69 years, female 720.4
GTEX-1LNCM-0926-SM-DHXK5 50-59 years, female 718.4
GTEX-1GN1U-2326-SM-9MQK4 50-59 years, female 717.9
GTEX-QDT8-2226-SM-EZ6LT 30-39 years, female 715.8
GTEX-18A7A-2626-SM-7LG6L 50-59 years, female 713.4
GTEX-13OVJ-2426-SM-5KM3I 50-59 years, female 710.2
GTEX-13QBU-1526-SM-5LU3W 40-49 years, female 709.9
GTEX-13VXT-1526-SM-5LU3J 20-29 years, female 709.2
GTEX-11XUK-1626-SM-5GU5O 40-49 years, female 708.4
GTEX-13X6H-1026-SM-5SIBE 50-59 years, female 697.4
GTEX-145ME-1226-SM-5SIB6 40-49 years, female 696.9
GTEX-1HBPH-2726-SM-A96TW 40-49 years, female 696.6
GTEX-13D11-1126-SM-5KLYS 50-59 years, female 696.3
GTEX-13W3W-1526-SM-5LU5I 60-69 years, female 694.5
GTEX-17JCI-2326-SM-7IGPC 60-69 years, female 692.5
GTEX-1S5ZU-2326-SM-EAZ5B 20-29 years, female 691.5
GTEX-1AMFI-1426-SM-731EL 50-59 years, female 690.4
GTEX-X15G-1726-SM-4PQZN 50-59 years, female 689.5
GTEX-PLZ4-2826-SM-3P617 50-59 years, female 686.2
GTEX-11GSP-0226-SM-5A5KV 60-69 years, female 685.7
GTEX-RU72-2226-SM-46MUE 50-59 years, female 680.2
GTEX-145LS-2326-SM-5TDCY 60-69 years, female 677.7
GTEX-1HSGN-2426-SM-C1YRI 40-49 years, female 677.1
GTEX-T2IS-2026-SM-4DM6W 20-29 years, female 673.2
GTEX-ZYFG-1726-SM-5GZZB 60-69 years, female 673.1
GTEX-P78B-1926-SM-3P616 40-49 years, female 673.0
GTEX-1GF9X-2426-SM-7SB7W 40-49 years, female 672.2
GTEX-133LE-1226-SM-5IFGC 20-29 years, female 666.4
GTEX-RU1J-0826-SM-46MUU 20-29 years, female 661.0
GTEX-15DYW-2626-SM-6LPK7 60-69 years, female 660.3
GTEX-1J8JJ-0826-SM-AHZ3F 60-69 years, female 658.9
GTEX-PX3G-2426-SM-48TZZ 20-29 years, female 653.9
GTEX-12WSD-2726-SM-59HLR 60-69 years, female 651.3
GTEX-139D8-2426-SM-5KM3A 30-39 years, female 650.3
GTEX-W5WG-0926-SM-4RTX9 50-59 years, female 646.4
GTEX-11DXX-1426-SM-5GIDU 60-69 years, female 646.0
GTEX-131YS-2226-SM-5P9G8 60-69 years, female 644.6
GTEX-1399U-1726-SM-5P9J4 50-59 years, female 644.3
GTEX-ZVT2-0326-SM-5E44G 50-59 years, female 641.9
GTEX-1K9T9-2426-SM-DHXKT 50-59 years, female 641.6
GTEX-1JN76-1426-SM-AHZ4F 20-29 years, female 641.0
GTEX-14PN3-1526-SM-6ETZM 60-69 years, female 635.2
GTEX-1269C-1826-SM-5N9E1 60-69 years, female 634.8
GTEX-15UF6-2026-SM-6LPI3 70-79 years, female 634.4
GTEX-1399S-2126-SM-5J2MH 30-39 years, female 631.5
GTEX-18D9A-0826-SM-718C1 30-39 years, female 626.8
GTEX-13PVR-1226-SM-5RQJ2 60-69 years, female 625.9
GTEX-14AS3-1326-SM-5RQJE 40-49 years, female 621.2
GTEX-12ZZX-2026-SM-5LZV9 40-49 years, female 619.5
GTEX-16MT8-2226-SM-6LPK2 60-69 years, female 618.8
GTEX-14BIN-1426-SM-664NI 50-59 years, female 615.3
GTEX-1LKK1-1626-SM-EVR4Y 50-59 years, female 615.3
GTEX-ZPIC-1426-SM-4WWCP 40-49 years, female 601.3
GTEX-1A32A-2726-SM-73KVU 50-59 years, female 600.0
GTEX-U3ZN-1026-SM-4DXTC 30-39 years, female 599.6
GTEX-TSE9-2226-SM-4DXUR 60-69 years, female 593.5
GTEX-11VI4-1026-SM-5EQM1 40-49 years, female 591.1
GTEX-11EM3-1726-SM-5N9D1 20-29 years, female 590.8
GTEX-WYVS-1526-SM-4OND4 40-49 years, female 587.8
GTEX-T6MO-1126-SM-4DM5D 40-49 years, female 587.7
GTEX-Q734-0726-SM-48TZP 40-49 years, female 586.1
GTEX-1QPFJ-1726-SM-EXOJU 30-39 years, female 568.5
GTEX-12WSK-1926-SM-5LZVK 40-49 years, female 567.0
GTEX-YJ8O-1026-SM-5CVM5 40-49 years, female 562.6
GTEX-145MI-2626-SM-5QGQ8 60-69 years, female 557.8
GTEX-1AMEY-0926-SM-72D6G 30-39 years, female 550.9
GTEX-ZC5H-2026-SM-5CVN2 40-49 years, female 548.2
GTEX-13N11-0526-SM-5IJFI 50-59 years, female 540.0
GTEX-16NGA-0426-SM-7LG6K 40-49 years, female 538.4
GTEX-1HCUA-1326-SM-9WPP6 50-59 years, female 528.7
GTEX-11ZVC-1426-SM-5EGGA 50-59 years, female 526.9
GTEX-13PL7-2326-SM-5L3FY 60-69 years, female 524.5
GTEX-15DDE-2326-SM-6AJA8 50-59 years, female 524.4
GTEX-14PKV-1226-SM-6871T 20-29 years, female 524.3
GTEX-1MA7W-1426-SM-EV7A1 20-29 years, female 523.7
GTEX-13U4I-2126-SM-5LU55 40-49 years, female 522.6
GTEX-15SDE-0926-SM-6LPIA 50-59 years, female 521.3
GTEX-183WM-1926-SM-72D5F 70-79 years, female 520.8
GTEX-P4QT-2426-SM-3NMCL 50-59 years, female 518.4
GTEX-146FH-2526-SM-5Q5BP 50-59 years, female 512.8
GTEX-ZYY3-2726-SM-5EGH4 60-69 years, female 509.6
GTEX-1RDX4-0826-SM-E9TK7 50-59 years, female 500.6
GTEX-WYBS-2426-SM-4ONDI 60-69 years, female 497.8
GTEX-Y3IK-2026-SM-4YCDG 50-59 years, female 491.1
GTEX-1JN1M-2126-SM-D4P2X 60-69 years, female 484.8
GTEX-11ZTT-1826-SM-5CVLN 60-69 years, female 484.7
GTEX-11ZTS-1926-SM-5CVLA 60-69 years, female 483.0
GTEX-XV7Q-1426-SM-4BRWA 40-49 years, female 482.9
GTEX-1F88E-2026-SM-7MXVP 60-69 years, female 478.4
GTEX-ZAJG-2726-SM-5S2MU 50-59 years, female 470.2
GTEX-1QP28-1326-SM-DPRXZ 50-59 years, female 469.7
GTEX-12WSG-1426-SM-5FQUK 50-59 years, female 466.0
GTEX-S7SF-1326-SM-4AD4P 20-29 years, female 455.9
GTEX-1F6RS-2726-SM-7MKHA 60-69 years, female 450.2
GTEX-1F48J-2326-SM-7MKG3 50-59 years, female 443.2
GTEX-1GZHY-2426-SM-9JGGK 50-59 years, female 443.1
GTEX-13FTX-0926-SM-5IFF7 20-29 years, female 440.9
GTEX-1A8FM-2226-SM-7PC1C 50-59 years, female 436.5
GTEX-11EMC-1726-SM-5H11P 60-69 years, female 432.3
GTEX-1MCC2-1026-SM-EVR5I 30-39 years, female 431.6
GTEX-P4PP-2426-SM-3P61L 30-39 years, female 428.8
GTEX-1H2FU-2326-SM-9WG7R 60-69 years, female 415.4
GTEX-14BMU-1726-SM-5TDE8 20-29 years, female 410.8
GTEX-1LGRB-2326-SM-CNNPU 50-59 years, female 389.1
GTEX-S32W-1226-SM-4AD67 50-59 years, female 374.6
GTEX-OHPK-2426-SM-3MJGH 50-59 years, female 355.4
GTEX-132AR-1426-SM-5IFF1 50-59 years, female 264.3
Show allShow less

OVARY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

539.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Ovary
Scaled Tags Per Million: 539.8
FF:10020-101D2 47,75,84 years, female 539.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org